Co-expression analysis

Gene ID	Os04g0650700
Gene name
Homology with Arabidopsis	Similar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=1e-1)
Module size	6 genes
NF	0.19
%ile	17.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.6	0.82	Os04g0650700	AK058733.1	-	L-asparaginase (L-asparagine amidohydrolase)	1e-1	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.40	51.1	0.86	Os03g0610800	AK107194.1	-	Serpin	3e+0	At1g72416	heat shock protein binding	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.35	41.7	0.81	Os07g0654400	9635.m04629	-	BLE2 protein	1e-1	At2g34150	WAVE1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	0.83	Os06g0494400	AK067594.1	-	Multi antimicrobial extrusion protein MatE familyprotein	1e-3	At5g52450	MATE efflux protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.11	6.5	0.83	Os06g0120200	AK066196.1	-	Protein of unknown function DUF594 family protein	3e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	0.83	Os12g0438300	AK067669.1	-	Disease resistance protein family protein	3e+0	At3g60090	VQ motif-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
51.2	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
29.5	99.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.1	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5	97.7	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3	97.7	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1	97.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.200	1	GO:0006516	The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.

Inter-species module comparison

A co-expression module including the grape gene, 1614789_at, orthologous to the query gene, Os04g0650700

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	75.7	1614789_at	At3g16150	hypothetical protein LOC100248834	-	7e-9	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.70	88.6	1611719_at	At3g16150	hypothetical protein LOC100267226	-	2e-3	At5g44050	MATE efflux family protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	1615128_at	At3g16150	hypothetical protein LOC100253412	-	1e+0	At3g45093	-	O.I.	H.G.	S.X.	Please select
0.56	79.4	1607360_at	At3g16150	hypothetical protein LOC100246988	-	2e-47	At1g78510	SPS1 (solanesyl diphosphate synthase 1)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1615821_at	At3g16150	hypothetical protein LOC100252905	-	1e-31	At4g09350	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1609903_at	At3g16150	hypothetical protein LOC100256148	-	4e+0	At5g02200	FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1615141_at	At3g16150	hypothetical protein LOC100247840	-	2e+0	At3g01970	WRKY45	O.I.	H.G.	S.X.	Please select
0.36	50.7	1610871_s_at	At3g16150	hypothetical protein LOC100244516	-	0	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1619887_at	At3g16150	hypothetical protein LOC100255748	-	4e-10	At1g19740	ATP-dependent protease La (LON) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1607155_at	At3g16150	hypothetical protein LOC100266884	-	2e-6	At1g50020	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1609710_at	At3g16150	hypothetical protein LOC100252409	-	2e-12	At1g22160	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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