CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0650700

Gene name
Homology with Arabidopsis Similar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=1e-1)

Module size 6 genes

NF 0.19

%ile 17.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.82 Os04g0650700 AK058733.1 - L-asparaginase (L-asparagine amidohydrolase) 1e-1 At3g16150 L-asparaginase, putative / L-asparagine amidohydrolase, putative O.I. H.G. S.X.
0.40 51.1 0.86 Os03g0610800 AK107194.1 - Serpin 3e+0 At1g72416 heat shock protein binding O.I. H.G. S.X.
0.35 41.7 0.81 Os07g0654400 9635.m04629 - BLE2 protein 1e-1 At2g34150 WAVE1 O.I. H.G. S.X.
0.19 15.1 0.83 Os06g0494400 AK067594.1 - Multi antimicrobial extrusion protein MatE familyprotein 1e-3 At5g52450 MATE efflux protein-related O.I. H.G. S.X.
0.11 6.5 0.83 Os06g0120200 AK066196.1 - Protein of unknown function DUF594 family protein 3e-1 At1g74560 NRP1 (NAP1-RELATED PROTEIN 1) O.I. H.G. S.X.
0.09 4.9 0.83 Os12g0438300 AK067669.1 - Disease resistance protein family protein 3e+0 At3g60090 VQ motif-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
29.5 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 1 GO:0006516 The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues other than as a moiety of nucleic acid; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g16150, orthologous to the query gene, Os04g0650700

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At3g16150 820860 L-asparaginase, putative / L-asparagine amidohydrolase, putative F:asparaginase activity;P:glycoprotein catabolic process;C:cellular_component unknown;BOMFPA O.I. H.G. S.X.
0.57 73.8 At5g16980 831561 NADP-dependent oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:response to oxidative stress, response to cyclopentenone;C:unknown;BOFMPA O.I. H.G. S.X.
0.33 38.1 At2g04040 814938 TX1 AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+. O.I. H.G. S.X.
0.09 2.8 At2g16450 816143 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.09 2.8 At5g49690 835032 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBOVF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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