CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0648800

Gene name
Homology with Arabidopsis Similar to At2g15530: zinc finger (C3HC4-type RING finger) family protein (HF=1e-6)

Module size 34 genes

NF 0.24

%ile 23.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.4 0.93 Os04g0648800 AK067751.1 - Conserved hypothetical protein 1e-6 At2g15530 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.47 62.3 0.94 Os01g0268800 AK105874.1 - Ubiquitin-associated domain containing protein 2e-4 At3g56740 ubiquitin-associated (UBA)/TS-N domain-containing protein O.I. H.G. S.X.
0.43 55.4 0.95 Os04g0398600 AK073335.1 - - 3e-32 At5g61840 GUT1 O.I. H.G. S.X.
0.41 52.4 0.93 Os09g0558000 AK111778.1 - Protein phosphatase type-2C 9e-10 At2g25070 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.38 46.9 0.96 Os03g0120300 AK066854.1 - THH1 5e-14 At1g14530 THH1 (TOM THREE HOMOLOG 1) O.I. H.G. S.X.
0.31 34.5 0.96 Os08g0562200 AK099629.1 - No apical meristem (NAM) protein domain containingprotein 2e-2 At5g04410 NAC2 O.I. H.G. S.X.
0.30 32.7 0.95 Os05g0511400 AK101120.1 - Protein kinase GhCLK1 (Fragment) 3e-41 At4g14350 protein kinase family protein O.I. H.G. S.X.
0.29 31.1 0.95 Os10g0545000 AK069472.1 - - 2e-1 At5g64560 magnesium transporter CorA-like family protein (MRS2-2) O.I. H.G. S.X.
0.29 31.1 0.94 Os06g0715400 AK073963.1 - Conserved hypothetical protein 1e-2 At5g66250 kinectin-related O.I. H.G. S.X.
0.29 31.1 0.94 Os02g0265700 AK100882.1 - Hypothetical protein 2e+0 At5g54840 SGP1 O.I. H.G. S.X.
0.28 31.1 0.95 Os01g0338200 AK068083.1 - Mov34/MPN/PAD-1 family protein 1e+0 At4g16144 - O.I. H.G. S.X.
0.28 31.1 0.95 Os01g0187400 AK099852.1 - Conserved hypothetical protein 8e-22 At5g11700 glycine-rich protein O.I. H.G. S.X.
0.27 27.5 0.96 Os01g0141100 AK062139.1 - ATPase of the AAA+ class 4e-52 At2g27600 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) O.I. H.G. S.X.
0.26 25.6 0.93 Os05g0163400 AK106311.1 - Zn-finger, RING domain containing protein 2e-1 At1g74970 RPS9 (RIBOSOMAL PROTEIN S9) O.I. H.G. S.X.
0.26 25.6 0.95 Os06g0714000 AK069538.1 - Protein of unknown function UPF0183 family protein 1e-6 At3g51130 unknown protein O.I. H.G. S.X.
0.26 25.6 0.95 Os01g0779400 AK072085.1 - SNF2-related domain containing protein 1e-17 At1g50410 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein O.I. H.G. S.X.
0.25 24.1 0.96 Os10g0455900 AK072120.1 - Protein of unknown function DUF1336 domaincontaining protein 7e-21 At5g45560 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein O.I. H.G. S.X.
0.23 21.2 0.93 Os05g0302300 AK066463.1 - Transcription factor jumonji, jmjC domaincontaining protein 2e-12 At4g20400 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein O.I. H.G. S.X.
0.23 21.2 0.95 Os03g0765100 AK062731.1 - Conserved hypothetical protein 2e+0 At4g22105 SCRL26 (SCR-Like 26) O.I. H.G. S.X.
0.23 21.2 0.96 Os07g0607300 AK102747.1 - Agenet domain containing protein 2e-2 At3g44590 60S acidic ribosomal protein P2 (RPP2D) O.I. H.G. S.X.
0.22 19.4 0.95 Os07g0690300 AK099674.1 - Zn-finger, RING domain containing protein 5e-10 At3g05670 PHD finger family protein O.I. H.G. S.X.
0.21 17.9 0.95 Os09g0530700 AK100759.1 - Conserved hypothetical protein 4e+0 At2g31345 unknown protein O.I. H.G. S.X.
0.20 16.5 0.94 Os04g0599100 AK072303.1 - PWWP domain containing protein 8e-6 At3g03140 - O.I. H.G. S.X.
0.20 16.5 0.96 Os03g0308000 AK100355.1 - Ubiquitin-conjugating enzymes domain containingprotein 5e-11 At3g17000 UBC32 (ubiquitin-conjugating enzyme 32) O.I. H.G. S.X.
0.19 15.1 0.96 Os11g0114700 AK070834.1 - PAP/25A core domain containing protein 4e-23 At3g51620 - O.I. H.G. S.X.
0.18 13.7 0.96 Os02g0550000 CA998950 - Conserved hypothetical protein 7e+0 At5g11360 - O.I. H.G. S.X.
0.17 12.6 0.96 Os06g0105600 AK106556.1 - Hypothetical protein 3e-4 At5g47480 unknown protein O.I. H.G. S.X.
0.17 12.6 0.95 Os02g0516600 AK068618.1 - Zn-finger, RING domain containing protein 5e-3 At3g26730 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.15 10.3 0.97 Os11g0206700 AK069964.1 - Guanine nucleotide binding protein (G-protein),alpha subunit family protein 4e-29 At1g31930 XLG3 (extra-large GTP-binding protein 3) O.I. H.G. S.X.
0.14 9.3 0.95 Os03g0344700 AK066938.1 - - 2e-43 At1g02890 AAA-type ATPase family protein O.I. H.G. S.X.
0.14 9.3 0.95 Os06g0154500 AK111691.1 - Mitogen-activated protein kinase (MAP kinase 6) 5e-36 At2g43790 ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) O.I. H.G. S.X.
0.11 6.5 0.94 Os02g0119400 AK102774.1 - Syntaxin 52 (AtSYP52) 4e-11 At1g79590 SYP52 (SYNTAXIN OF PLANTS 52) O.I. H.G. S.X.
0.10 5.7 0.96 Os01g0254900 AK068204.1 - Syntaxin 1e-5 At5g46860 VAM3 O.I. H.G. S.X.
0.09 4.9 0.94 Os05g0508700 AK063235.1 - TRAF-like domain containing protein 6e-15 At5g43560 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.94	99.4	0.93	Os04g0648800	AK067751.1	-	Conserved hypothetical protein	1e-6	At2g15530	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.47	62.3	0.94	Os01g0268800	AK105874.1	-	Ubiquitin-associated domain containing protein	2e-4	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.
0.43	55.4	0.95	Os04g0398600	AK073335.1	-	-	3e-32	At5g61840	GUT1	O.I.	H.G.	S.X.
0.41	52.4	0.93	Os09g0558000	AK111778.1	-	Protein phosphatase type-2C	9e-10	At2g25070	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.38	46.9	0.96	Os03g0120300	AK066854.1	-	THH1	5e-14	At1g14530	THH1 (TOM THREE HOMOLOG 1)	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os08g0562200	AK099629.1	-	No apical meristem (NAM) protein domain containingprotein	2e-2	At5g04410	NAC2	O.I.	H.G.	S.X.
0.30	32.7	0.95	Os05g0511400	AK101120.1	-	Protein kinase GhCLK1 (Fragment)	3e-41	At4g14350	protein kinase family protein	O.I.	H.G.	S.X.
0.29	31.1	0.95	Os10g0545000	AK069472.1	-	-	2e-1	At5g64560	magnesium transporter CorA-like family protein (MRS2-2)	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os06g0715400	AK073963.1	-	Conserved hypothetical protein	1e-2	At5g66250	kinectin-related	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os02g0265700	AK100882.1	-	Hypothetical protein	2e+0	At5g54840	SGP1	O.I.	H.G.	S.X.
0.28	31.1	0.95	Os01g0338200	AK068083.1	-	Mov34/MPN/PAD-1 family protein	1e+0	At4g16144	-	O.I.	H.G.	S.X.
0.28	31.1	0.95	Os01g0187400	AK099852.1	-	Conserved hypothetical protein	8e-22	At5g11700	glycine-rich protein	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os01g0141100	AK062139.1	-	ATPase of the AAA+ class	4e-52	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	O.I.	H.G.	S.X.
0.26	25.6	0.93	Os05g0163400	AK106311.1	-	Zn-finger, RING domain containing protein	2e-1	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.
0.26	25.6	0.95	Os06g0714000	AK069538.1	-	Protein of unknown function UPF0183 family protein	1e-6	At3g51130	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.95	Os01g0779400	AK072085.1	-	SNF2-related domain containing protein	1e-17	At1g50410	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os10g0455900	AK072120.1	-	Protein of unknown function DUF1336 domaincontaining protein	7e-21	At5g45560	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	O.I.	H.G.	S.X.
0.23	21.2	0.93	Os05g0302300	AK066463.1	-	Transcription factor jumonji, jmjC domaincontaining protein	2e-12	At4g20400	transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein	O.I.	H.G.	S.X.
0.23	21.2	0.95	Os03g0765100	AK062731.1	-	Conserved hypothetical protein	2e+0	At4g22105	SCRL26 (SCR-Like 26)	O.I.	H.G.	S.X.
0.23	21.2	0.96	Os07g0607300	AK102747.1	-	Agenet domain containing protein	2e-2	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	O.I.	H.G.	S.X.
0.22	19.4	0.95	Os07g0690300	AK099674.1	-	Zn-finger, RING domain containing protein	5e-10	At3g05670	PHD finger family protein	O.I.	H.G.	S.X.
0.21	17.9	0.95	Os09g0530700	AK100759.1	-	Conserved hypothetical protein	4e+0	At2g31345	unknown protein	O.I.	H.G.	S.X.
0.20	16.5	0.94	Os04g0599100	AK072303.1	-	PWWP domain containing protein	8e-6	At3g03140	-	O.I.	H.G.	S.X.
0.20	16.5	0.96	Os03g0308000	AK100355.1	-	Ubiquitin-conjugating enzymes domain containingprotein	5e-11	At3g17000	UBC32 (ubiquitin-conjugating enzyme 32)	O.I.	H.G.	S.X.
0.19	15.1	0.96	Os11g0114700	AK070834.1	-	PAP/25A core domain containing protein	4e-23	At3g51620	-	O.I.	H.G.	S.X.
0.18	13.7	0.96	Os02g0550000	CA998950	-	Conserved hypothetical protein	7e+0	At5g11360	-	O.I.	H.G.	S.X.
0.17	12.6	0.96	Os06g0105600	AK106556.1	-	Hypothetical protein	3e-4	At5g47480	unknown protein	O.I.	H.G.	S.X.
0.17	12.6	0.95	Os02g0516600	AK068618.1	-	Zn-finger, RING domain containing protein	5e-3	At3g26730	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.15	10.3	0.97	Os11g0206700	AK069964.1	-	Guanine nucleotide binding protein (G-protein),alpha subunit family protein	4e-29	At1g31930	XLG3 (extra-large GTP-binding protein 3)	O.I.	H.G.	S.X.
0.14	9.3	0.95	Os03g0344700	AK066938.1	-	-	2e-43	At1g02890	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.14	9.3	0.95	Os06g0154500	AK111691.1	-	Mitogen-activated protein kinase (MAP kinase 6)	5e-36	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.
0.11	6.5	0.94	Os02g0119400	AK102774.1	-	Syntaxin 52 (AtSYP52)	4e-11	At1g79590	SYP52 (SYNTAXIN OF PLANTS 52)	O.I.	H.G.	S.X.
0.10	5.7	0.96	Os01g0254900	AK068204.1	-	Syntaxin	1e-5	At5g46860	VAM3	O.I.	H.G.	S.X.
0.09	4.9	0.94	Os05g0508700	AK063235.1	-	TRAF-like domain containing protein	6e-15	At5g43560	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.3 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.3 97.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
5.9 97.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3 96.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
17.3	98.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.1	98.4	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
6.3	97.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0	97.0	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
5.9	97.0	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6	96.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6	96.9	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4	96.8	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3	96.7	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.3	96.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Os04g0648800
Gene name
Homology with Arabidopsis	Similar to At2g15530: zinc finger (C3HC4-type RING finger) family protein (HF=1e-6)
Module size	34 genes
NF	0.24
%ile	23.1

Co-expression analysis

Gene ID Os04g0648800 Gene name Homology with ArabidopsisSimilar to At2g15530: zinc finger (C3HC4-type RING finger) family protein (HF=1e-6) Module size 34 genes NF 0.24 %ile 23.1

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0648800

Gene name
Homology with Arabidopsis Similar to At2g15530: zinc finger (C3HC4-type RING finger) family protein (HF=1e-6)

Module size 34 genes

NF 0.24

%ile 23.1

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays