CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0644600

Gene name
Homology with Arabidopsis Similar to At1g52510: hydrolase, alpha/beta fold family protein (HF=4e-21)

Module size 6 genes

NF 0.57

%ile 78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os04g0644600 AK099966.1 - Epoxide hydrolase family protein 4e-21 At1g52510 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.71 89.6 0.96 Os08g0114100 AK099560.1 - Conserved hypothetical protein 4e-27 At1g64680 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os07g0171100 AK066475.1 - TPR-like domain containing protein 2e-16 At1g55480 binding / protein binding O.I. H.G. S.X.
0.47 62.3 0.96 Os04g0448600 AK068709.1 - ChaC-like protein family protein 2e-3 At1g44790 ChaC-like family protein O.I. H.G. S.X.
0.47 62.3 0.96 Os03g0704100 AK070474.1 - PAP fibrillin family protein 2e+0 At1g35410 - O.I. H.G. S.X.
0.39 48.3 0.96 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.96	Os04g0644600	AK099966.1	-	Epoxide hydrolase family protein	4e-21	At1g52510	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.71	89.6	0.96	Os08g0114100	AK099560.1	-	Conserved hypothetical protein	4e-27	At1g64680	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.98	Os07g0171100	AK066475.1	-	TPR-like domain containing protein	2e-16	At1g55480	binding / protein binding	O.I.	H.G.	S.X.
0.47	62.3	0.96	Os04g0448600	AK068709.1	-	ChaC-like protein family protein	2e-3	At1g44790	ChaC-like family protein	O.I.	H.G.	S.X.
0.47	62.3	0.96	Os03g0704100	AK070474.1	-	PAP fibrillin family protein	2e+0	At1g35410	-	O.I.	H.G.	S.X.
0.39	48.3	0.96	Os01g0912700	AK068528.1	-	Conserved hypothetical protein	1e-1	At2g01340	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os11g0595200	AK106159.1	-	PAP fibrillin family protein	4e-2	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os11g0242400	AK067025.1	-	Rieske [2Fe-2S] region domain containing protein	1e-1	At1g71500	Rieske (2Fe-2S) domain-containing protein	O.I.	H.G.	S.X.
0.57	77.0	0.97	Os07g0656700	AU173917	-	Protein of unknown function DUF1334 family protein	4e-11	At5g13720	-	O.I.	H.G.	S.X.
0.53	71.3	0.95	Os02g0197200	AK066134.1	-	Mlo-related protein family protein	1e-2	At4g24250	MLO13 (MILDEW RESISTANCE LOCUS O 13)	O.I.	H.G.	S.X.
0.52	69.6	0.96	Os03g0128800	AK066570.1	-	Conserved hypothetical protein	7e-1	At1g23530	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os12g0124000	AK059747.1	-	SMAD/FHA domain containing protein	5e-1	At5g08400	unknown protein	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os10g0419500	AK071316.1	-	Acireductone dioxygenase, ARD family protein	2e-10	At5g43850	ARD4	O.I.	H.G.	S.X.
0.47	62.3	0.94	Os08g0558200	AK069761.1	-	-	8e-13	At5g03880	electron carrier	O.I.	H.G.	S.X.
0.46	60.9	0.95	Os03g0284600	AK110712.1	-	Conserved hypothetical protein	1e-1	At2g37240	-	O.I.	H.G.	S.X.
0.44	58.1	0.94	Os07g0558300	AK120618.1	-	Inositol monophosphatase family protein	5e-2	At4g05090	inositol monophosphatase family protein	O.I.	H.G.	S.X.
0.43	55.4	0.93	Os08g0138900	9636.m00366	-	Conserved hypothetical protein	2e+0	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.
0.43	55.4	0.95	Os06g0472000	AK063588.1	-	Mss4-like domain containing protein	3e-11	At1g53670	MSRB1 (methionine sulfoxide reductase B 1)	O.I.	H.G.	S.X.
0.42	53.9	0.95	Os03g0744700	AK071178.1	-	Conserved hypothetical protein	4e-2	At1g62250	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	0.93	Os06g0597900	AK065544.1	-	-	3e-6	At5g20140	SOUL heme-binding family protein	O.I.	H.G.	S.X.
0.40	51.1	0.94	Os09g0250700	AK120335.1	-	ABC-1 domain containing protein	4e-19	At3g07700	ABC1 family protein	O.I.	H.G.	S.X.
0.40	51.1	0.96	Os02g0556800	AK100187.1	-	Conserved hypothetical protein	3e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.40	51.1	0.98	Os12g0420200	CB652532	-	38 kDa ribosome-associated protein	1e+0	At1g31250	proline-rich family protein	O.I.	H.G.	S.X.
0.38	46.9	0.95	Os01g0585300	AK099180.1	-	Protein of unknown function DUF1118 family protein	5e-3	At1g74730	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.93	Os10g0209700	AK070579.1	-	Heavy metal transport/detoxification proteindomain containing protein	6e-1	At5g63530	ATFP3	O.I.	H.G.	S.X.
0.36	44.0	0.94	Os08g0101700	AK061172.1	-	Cytochrome b561	1e-1	At1g13930	-	O.I.	H.G.	S.X.
0.36	44.0	0.96	Os01g0913000	AF022741.1	-	-	2e-6	At5g16400	ATF2	O.I.	H.G.	S.X.
0.35	41.7	0.95	Os09g0532700	AK069946.1	-	Alpha/beta hydrolase family protein	2e-2	At4g25290	DNA photolyase	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os08g0379400	AK112013.1	-	Quinone oxidoreductase-like protein	8e-4	At1g23740	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.
0.32	36.3	0.93	Os12g0628100	AK121150.1	-	Actin depolymerizing factor (ADF) (Fragment)	2e-9	At4g25590	ADF7 (actin depolymerizing factor 7)	O.I.	H.G.	S.X.
0.31	34.5	0.94	Os11g0603200	AK059060.1	-	ABCF-type protein	1e-19	At5g64840	ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os08g0162600	AK060121.1	-	Rubredoxin-type Fe(Cys)4 protein family protein	6e-22	At5g17170	ENH1 (enhancer of sos3-1)	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os02g0764500	AK066291.1	-	Lhca5 protein	8e-3	At1g45474	LHCA5	O.I.	H.G.	S.X.
0.30	32.7	0.95	Os04g0657300	CB624212	-	Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1)	2e-1	At1g68552	CPuORF53 (Conserved peptide upstream open reading frame 53)	O.I.	H.G.	S.X.
0.29	31.1	0.90	Os03g0782500	AK105637.1	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	1e-15	At1g09530	PIF3 (PHYTOCHROME INTERACTING FACTOR 3)	O.I.	H.G.	S.X.
0.29	31.1	0.93	Os06g0254300	AK066241.1	-	Caleosin related family protein	8e-3	At1g23240	caleosin-related family protein	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os02g0285800	AK099035.1	-	GTP-binding protein TypA family protein	4e-62	At5g13650	elongation factor family protein	O.I.	H.G.	S.X.
0.29	31.1	0.94	Os04g0640500	AK070519.1	-	ABC-1 domain containing protein	9e-5	At1g71810	ABC1 family protein	O.I.	H.G.	S.X.
0.29	31.1	0.97	Os08g0553800	AK065711.1	-	Isoflavone reductase family protein	1e-25	At4g35250	vestitone reductase-related	O.I.	H.G.	S.X.
0.29	31.1	0.97	Os03g0311300	AK073167.1	-	The start codon is not identified.	1e-27	At1g56500	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os05g0555300	AK062997.1	-	Ferredoxin domain containing protein	2e-12	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.
0.27	27.5	0.94	Os11g0127800	AK059969.1	-	Forkhead-associated domain containing protein	1e-1	At4g38092	unknown protein	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os03g0844900	AK100284.1	-	RNA binding S1 domain containing protein	2e-1	At2g43610	glycoside hydrolase family 19 protein	O.I.	H.G.	S.X.
0.26	25.6	0.89	Os07g0412100	AY069940.1	-	Granule-bound starch synthase I, chloroplastprecursor (EC 2.4.1.21) (GBSS I)	1e-10	At1g32900	starch synthase, putative	O.I.	H.G.	S.X.
0.26	25.6	0.91	Os04g0412100	AK108223.1	-	Conserved hypothetical protein	2e+0	At1g80940	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.94	Os07g0143000	AK067910.1	-	Aldo/keto reductase family protein	3e-40	At1g06690	aldo/keto reductase family protein	O.I.	H.G.	S.X.
0.25	24.1	0.93	Os03g0152600	AK109525.1	-	Conserved hypothetical protein	4e-20	At2g36895	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
76.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.9 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.6 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
76.8	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
33.9	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.6	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8	97.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1	97.7	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0	97.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2	97.4	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.063 1 GO:0006725 The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
0.063 1 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.063	1	GO:0006725	The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
0.063	1	GO:0007242	A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Os04g0644600
Gene name
Homology with Arabidopsis	Similar to At1g52510: hydrolase, alpha/beta fold family protein (HF=4e-21)
Module size	6 genes
NF	0.57
%ile	78.1

Co-expression analysis

Gene ID Os04g0644600 Gene name Homology with ArabidopsisSimilar to At1g52510: hydrolase, alpha/beta fold family protein (HF=4e-21) Module size 6 genes NF 0.57 %ile 78.1

Co-expressed genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0644600

Gene name
Homology with Arabidopsis Similar to At1g52510: hydrolase, alpha/beta fold family protein (HF=4e-21)

Module size 6 genes

NF 0.57

%ile 78.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays