CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0644600

Gene name
Homology with Arabidopsis Similar to At1g52510: hydrolase, alpha/beta fold family protein (HF=4e-21)

Module size 6 genes

NF 0.57

%ile 78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.96 Os04g0644600 AK099966.1 - Epoxide hydrolase family protein 4e-21 At1g52510 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.71 89.6 0.96 Os08g0114100 AK099560.1 - Conserved hypothetical protein 4e-27 At1g64680 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os07g0171100 AK066475.1 - TPR-like domain containing protein 2e-16 At1g55480 binding / protein binding O.I. H.G. S.X.
0.47 62.3 0.96 Os04g0448600 AK068709.1 - ChaC-like protein family protein 2e-3 At1g44790 ChaC-like family protein O.I. H.G. S.X.
0.47 62.3 0.96 Os03g0704100 AK070474.1 - PAP fibrillin family protein 2e+0 At1g35410 - O.I. H.G. S.X.
0.39 48.3 0.96 Os01g0912700 AK068528.1 - Conserved hypothetical protein 1e-1 At2g01340 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
76.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.9 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.6 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.063 1 GO:0006725 The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
0.063 1 GO:0007242 A series of reactions within the cell that occur as a result of a single trigger reaction or compound.

Inter-species module comparison

A co-expression module including the barley gene, Contig10144_s_at, orthologous to the query gene, Os04g0644600

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.0 Contig10144_s_at At1g52510 - - 1e-13 At1g52510 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.38 49.5 Contig4782_s_at At1g52510 - - 4e-1 At5g11950 protein homodimerization O.I. H.G. S.X.
0.18 18.2 Contig7474_s_at At1g52510 - - 6e+0 At5g40650 SDH2-2 O.I. H.G. S.X.
0.07 5.8 Contig16331_at At1g52510 - - 9e+0 Atmg01310 - O.I. H.G. S.X.
0.04 3.4 Contig10978_at At1g52510 - - 5e-14 At1g13270 MAP1C (METHIONINE AMINOPEPTIDASE 1B) O.I. H.G. S.X.
0.04 3.4 Contig4783_at At1g52510 - - 8e-20 At3g22960 PKP-ALPHA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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