Co-expression analysis

Gene ID Os04g0623500
Gene name
Homology with ArabidopsisSimilar to At3g14420: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (HF=7e-29)
Module size 32 genes
NF 0.21
%ile 19.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7993.60.85Os04g0623500AK068638.1-(S)-2-hydroxy-acid oxidase, peroxisomal (EC1.1.3.15) (Glycolate oxidase) (GOX) (Short chainalpha-hydroxy acid oxidase)7e-29At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.3948.30.94Os05g0543100AK065138.1-Clathrin adaptor complex, medium chain familyprotein3e-65At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.3846.90.93Os06g0598800AK101377.1-Fatty acid elongase 1-like protein1e-28At5g43760KCS20 (3-KETOACYL-COA SYNTHASE 20)O.I.H.G.S.X.
0.3440.00.92Os01g0226300AK059314.1-Reticulon family protein4e-2At2g46170reticulon family protein (RTNLB5)O.I.H.G.S.X.
0.3338.80.92Os10g0477100AK067258.1-Ankyrin-like protein5e-43At4g14360dehydration-responsive protein-relatedO.I.H.G.S.X.
0.3134.50.92Os11g0168100CR283190-Syntaxin 61 (AtSYP61) (Osmotic stess-sensitivemutant 1)4e+0At4g09090glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.3032.70.93Os01g0969100AK070623.1-Conserved hypothetical protein9e-75At1g08200AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)O.I.H.G.S.X.
0.2931.10.91Os03g0780200AK107920.1-Conserved hypothetical protein8e-2At5g17130cysteine-type peptidaseO.I.H.G.S.X.
0.2831.10.95Os03g0713100BE040116-Dynamin family protein2e-6At1g14830ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)O.I.H.G.S.X.
0.2831.10.91Os03g0836000AK063598.1-Actin 7 (Actin 2)0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.2831.10.93Os01g0660300AK106457.1-Pyruvate kinase isozyme G, chloroplast precursor(EC 2.7.1.40)8e-50At5g52920PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1)O.I.H.G.S.X.
0.2727.50.93Os09g0439700AK119953.1-Lung seven transmembrane receptor family protein4e-3At1g72480-O.I.H.G.S.X.
0.2422.40.90Os01g0756900AK058427.1-Conserved hypothetical protein8e-2At1g67860unknown proteinO.I.H.G.S.X.
0.2422.40.93Os07g0637400AK067595.1-Novel plant SNARE 12 (AtNPSN12)7e-13At1g48240ATNPSN12O.I.H.G.S.X.
0.2321.20.94Os10g0456400AK101916.1-Conserved hypothetical protein5e+0At5g23212-O.I.H.G.S.X.
0.2219.40.91Os02g0741100AK071144.1-Heat shock protein DnaJ2e-8At1g24120ARL1 (ARG1-LIKE 1)O.I.H.G.S.X.
0.2016.50.89Os01g0938200AK099501.1-RNA-binding protein BRUNOL5 (Fragment)2e-5At4g03110RNA-binding protein, putativeO.I.H.G.S.X.
0.2016.50.91Os03g0833800AK066209.1-Glycoside hydrolase, family 28 protein1e-3At3g62110glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinO.I.H.G.S.X.
0.2016.50.93Os09g0297400AF372833.1-Phosphate/phosphoenolpyruvate translocator2e-11At5g33320CUE1 (CAB UNDEREXPRESSED 1)O.I.H.G.S.X.
0.2016.50.92Os04g0583500AF247165.1-Expansin 4 (Fragment)2e+0At3g29030EXPA5 (EXPANSIN A5)O.I.H.G.S.X.
0.1915.10.93Os01g0978000CB678991-Uncoupling protein2e-7At3g54110PUMP1 (PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1)O.I.H.G.S.X.
0.1712.60.91Os09g0433600AK058686.1-Histone H42e-20At1g07660histone H4O.I.H.G.S.X.
0.1712.60.93Os02g0738900AK099699.1-Dynamin-like protein 64e-26At1g59610ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3)O.I.H.G.S.X.
0.1510.30.96Os06g0196600AK060515.1-3-oxoacyl-[acyl-carrier-protein] synthase I,chloroplast precursor (EC 2.3.1.41) (Beta-ketoacyl-ACPsynthase I) (KAS I)2e-23At5g46290KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)O.I.H.G.S.X.
0.149.30.96Os10g0377400AK111872.1-Ras-related protein Rab11D7e-10At4g39990RABA4B (RAB GTPASE HOMOLOG A4B)O.I.H.G.S.X.
0.149.30.90Os01g0171000AK100017.1-BRASSINOSTEROID INSENSITIVE 1-associated receptorkinase 1 precursor (EC 2.7.1.37) (BRI1-associatedreceptor kinase 1) (Somatic embryogenesis receptor-likekinase 3)6e-21At3g25560NIK2 (NSP-INTERACTING KINASE 2)O.I.H.G.S.X.
0.149.30.93Os01g0282800AK110638.1-Beta tubulin (Fragment)3e-6At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.
0.127.20.91Os01g0805900D30716.1-Tubulin beta-2 chain (Beta-2 tubulin)0At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.
0.127.20.93Os05g0105100AK102713.1-Ras-related protein Rab11C2e-18At1g09630ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)O.I.H.G.S.X.
0.084.20.95Os08g0513300AK068851.1-Conserved hypothetical protein1e-11At3g18240unknown proteinO.I.H.G.S.X.
0.084.20.91Os06g0195900AK064533.1-Hypothetical protein3e-103At1g50920GTP-binding protein-relatedO.I.H.G.S.X.
0.073.70.92Os08g0547100AK073704.1-Glucosamine/galactosamine-6-phosphate isomerasedomain containing protein2e-4At5g24400emb2024 (embryo defective 2024)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.899.1GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
18.499.0GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.798.2GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
9.197.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.297.4GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.897.3GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.797.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.797.3GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.697.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0492GO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.Link to AmiGO
0.0432GO:0015031The directed movement of proteins into, out of, within or between cells.Link to AmiGO
0.0411GO:0006633The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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