Co-expression analysis

Gene ID Os04g0621600
Gene name
Homology with ArabidopsisSimilar to At5g02840: LCL1 (LHY/CCA1-like 1) (HF=7e-2)
Module size 6 genes
NF 0.42
%ile 51.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.99Os04g0621600CB630709-NB-ARC domain containing protein7e-2At5g02840LCL1 (LHY/CCA1-like 1)O.I.H.G.S.X.
0.5068.00.99Os05g0121700AK107571.1-RecA bacterial DNA recombination protein familyprotein3e+0At3g53620AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)O.I.H.G.S.X.
0.5068.00.99Os01g0834300NM_190471.1--1e-1At2g26270unknown proteinO.I.H.G.S.X.
0.4355.40.99Os08g01999009636.m00956--4e+0At5g66980transcriptional factor B3 family proteinO.I.H.G.S.X.
0.2831.10.99Os06g04760009634.m02689--3e+0At3g17090protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.2321.20.99Os02g01463009630.m00448--2e+0At3g05710SYP43 (SYNTAXIN OF PLANTS 43)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
75.899.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
23.899.4GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
16.398.8GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.798.5GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.198.4GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.998.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.698.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.8900.2.A1_at, orthologous to the query gene, Os04g0621600

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9199.0Zm.8900.2.A1_atAt5g0284050S ribosomal protein L9-3e+0At3g01328-O.I.H.G.S.X.
0.5571.6Zm.12893.1.A1_atAt5g02840--2e+1At5g07040zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4861.3Zm.2853.1.A1_atAt5g02840hypothetical protein LOC100274141-1e-3At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.4251.3Zm.18485.1.S1_atAt5g02840DNA binding protein-4e-8At1g71260ATWHY2 (A. THALIANA WHIRLY 2)O.I.H.G.S.X.
0.3844.2Zm.18469.1.S1_atAt5g02840oxidoreductase-2e-7At4g13250short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.3742.3Zm.2711.1.A1_atAt5g02840hypothetical protein LOC100216734-4e+0At5g28288-O.I.H.G.S.X.
0.3742.3Zm.2716.1.A1_atAt5g02840--3e+0At4g28700AMT1O.I.H.G.S.X.
0.3641.3Zm.17291.1.A1_atAt5g02840Zn-dependent hydrolases, including glyoxylases-2e-5At4g33540metallo-beta-lactamase family proteinO.I.H.G.S.X.
0.3641.3Zm.9135.2.A1_atAt5g02840versicolorin reductase-4e-1At5g59990-O.I.H.G.S.X.
0.3538.9Zm.14129.1.A1_a_atAt5g0284040S ribosomal protein S24-1e-22At3g0492040S ribosomal protein S24 (RPS24A)O.I.H.G.S.X.
0.3538.9Zm.6665.1.S1_atAt5g02840hypothetical protein LOC100274698-3e-7At5g49720ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)O.I.H.G.S.X.
0.3131.6------O.I.H.G.S.X.
0.2724.6Zm.15928.1.S1_atAt5g02840VHS and GAT domain protein-2e+0At3g61550zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2724.6Zm.2181.1.S1_atAt5g02840--9e-1At2g10602unknown proteinO.I.H.G.S.X.
0.2724.6Zm.6644.2.A1_atAt5g02840--4e+0At5g42050-O.I.H.G.S.X.
0.2216.9Zm.3556.1.A1_atAt5g02840--2e+0At4g24590unknown proteinO.I.H.G.S.X.
0.1912.8Zm.12993.1.A1_atAt5g02840hypothetical protein LOC100273862-3e-2At3g04380SUVR4O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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