Co-expression analysis

Gene ID Os04g0618700
Gene name
Homology with ArabidopsisSimilar to At3g56210: binding (HF=2e+0)
Module size 6 genes
NF 0.15
%ile 12.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5573.70.71Os04g0618700AK120799.1-Protein kinase domain containing protein2e+0At3g56210bindingO.I.H.G.S.X.
0.8094.60.73Os12g0518200AK070844.1-Protein of unknown function DUF6 domain containingprotein3e+0At4g26290unknown proteinO.I.H.G.S.X.
0.6787.20.70Os01g0160800AB051108.1-Protein synthesis inhibitor II (EC 3.2.2.22)(Ribosome-inactivating protein II) (rRNA N-glycosidase)7e-1At2g43570chitinase, putativeO.I.H.G.S.X.
0.5068.00.77Os01g0963000AK109480.1-Peroxidase BP 1 precursor6e-1At5g40150peroxidase, putativeO.I.H.G.S.X.
0.084.20.70Os02g0605900AK064754.1-Chitinase (EC 3.2.1.14) A5e-1At3g54420ATEP3O.I.H.G.S.X.
0.031.40.66Os11g0212900AK111542.1-Hypothetical protein4e-4At5g55630ATKCO1O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.799.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
35.599.8GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.798.7GSM302915emb6D_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
13.998.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.898.5GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.898.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM195228EmbryoGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
11.898.3GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1051GO:0006032The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.Link to AmiGO
0.1051GO:0051707A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.Link to AmiGO
0.0911GO:0017148Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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