CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0617900

Gene name
Homology with Arabidopsis Similar to At5g26700: germin-like protein, putative (HF=8e-3)

Module size 12 genes

NF 0.40

%ile 47.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.69 Os04g0617900 AK109057.1 - Germin-like protein precursor 8e-3 At5g26700 germin-like protein, putative O.I. H.G. S.X.
0.54 71.9 0.75 Os06g0302000 AK106070.1 - Hypothetical protein 3e+0 At1g06475 unknown protein O.I. H.G. S.X.
0.50 68.0 0.81 Os11g0306400 AK106179.1 - O-methyltransferase, family 2 domain containingprotein 2e-1 At3g16190 isochorismatase hydrolase family protein O.I. H.G. S.X.
0.42 53.9 0.84 Os01g0307500 AK108663.1 - Cation transporter family protein 1e+0 At3g02670 proline-rich family protein O.I. H.G. S.X.
0.40 51.1 0.84 Os07g0643800 AK103858.1 - Plant disease resistance response protein familyprotein 1e-1 At1g01730 unknown protein O.I. H.G. S.X.
0.39 48.3 0.81 Os03g0306700 AK109929.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e-1 At2g27250 CLV3 (CLAVATA3) O.I. H.G. S.X.
0.35 41.7 0.83 Os04g0189012 9632.m00980 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) O.I. H.G. S.X.
0.32 36.3 0.65 Os10g0569600 BQ529575 - RIR1b protein precursor 1e+0 At2g25344 LCR14 (Low-molecular-weight cysteine-rich 14) O.I. H.G. S.X.
0.29 31.1 0.81 Os04g0208200 CB624786 - Cysteine proteinase 8e-2 At1g29090 peptidase C1A papain family protein O.I. H.G. S.X.
0.23 21.2 0.82 Os05g0515500 AK068905.1 - O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT) 7e-1 At1g53625 unknown protein O.I. H.G. S.X.
0.23 21.2 0.88 Os10g0165300 NM_195010.1 - Cytochrome P450 family protein 1e-2 At2g45580 CYP76C3 O.I. H.G. S.X.
0.19 15.1 0.79 Os01g0795000 AF200467.1 - Subtilisin-like secreted protease 2e-2 At4g10510 subtilase family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.4 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.2 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.143 1 GO:0043086 Any process that stops or reduces the activity of an enzyme.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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