CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0613000

Gene name
Homology with Arabidopsis Similar to At2g32270: ZIP3 (HF=1e-2)

Module size 7 genes

NF 0.17

%ile 14.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.4 0.76 Os04g0613000 AY323915.1 - Zinc transporter 1 precursor (ZRT/IRT-like protein1) 1e-2 At2g32270 ZIP3 O.I. H.G. S.X.
0.44 58.1 0.88 Os10g0524600 AK069238.1 - Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein 8e-2 At4g00230 XSP1 (xylem serine peptidase 1) O.I. H.G. S.X.
0.27 27.5 0.93 Os02g0756100 AK060615.1 - Conserved hypothetical protein 2e+0 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.17 12.6 0.89 Os04g0671900 AK071455.1 - Auxin response factor 8 3e-45 At1g30330 ARF6 (AUXIN RESPONSE FACTOR 6) O.I. H.G. S.X.
0.13 8.2 0.89 Os09g0456100 AK072474.1 - Remorin, C-terminal region domain containingprotein 4e-1 At4g24430 lyase O.I. H.G. S.X.
0.11 6.5 0.84 Os05g0441400 AK108756.1 - Uncharacterized plant-specific domain containingprotein 2e+0 At2g31035 - O.I. H.G. S.X.
0.04 2.0 0.89 Os11g0308800 AK068828.1 - Protein kinase-like domain containing protein 5e-1 At3g56800 CAM3 (CALMODULIN 3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.8 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.7 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.0 98.3 GSM159198 Inflorescence (P4, 10 - 15 cm), biological rep 1 GSE6893 Expression data for reproductive development in rice
11.1 98.2 GSM100446 Rice Bala 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
10.5 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM149410 Rice Azucena 1ppm Arsenate Rep3 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.5 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0010043 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus.
0.200 1 GO:0009725 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.
0.143 1 GO:0006417 Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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