CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0608900

Gene name
Homology with Arabidopsis Similar to At4g31170: protein kinase family protein (HF=3e-10)

Module size 6 genes

NF 0.27

%ile 27.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.92 Os04g0608900 AK111698.1 - Serine/threonine/tyrosine kinase 3e-10 At4g31170 protein kinase family protein O.I. H.G. S.X.
0.33 38.8 0.90 Os01g0769700 AK105465.1 - LpimPth4 6e-74 At3g51550 FER (FERONIA) O.I. H.G. S.X.
0.26 25.6 0.90 Os04g0594400 AK067019.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At4g17720 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.23 21.2 0.90 Os03g0264000 AK101372.1 - LAG1 homolog 2 2e-4 At3g19260 LOH2 (LAG ONE HOMOLOGUE 2) O.I. H.G. S.X.
0.22 19.4 0.90 Os02g0685900 C22384 - Calcium dependent protein kinase 1e-16 At4g38230 CPK26 O.I. H.G. S.X.
0.12 7.2 0.91 Os10g0510400 AK100601.1 - Putative methyltransferase DUF248 family protein 1e-3 At1g33170 dehydration-responsive family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.57	77.0	0.92	Os04g0608900	AK111698.1	-	Serine/threonine/tyrosine kinase	3e-10	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.
0.33	38.8	0.90	Os01g0769700	AK105465.1	-	LpimPth4	6e-74	At3g51550	FER (FERONIA)	O.I.	H.G.	S.X.
0.26	25.6	0.90	Os04g0594400	AK067019.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-1	At4g17720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.23	21.2	0.90	Os03g0264000	AK101372.1	-	LAG1 homolog 2	2e-4	At3g19260	LOH2 (LAG ONE HOMOLOGUE 2)	O.I.	H.G.	S.X.
0.22	19.4	0.90	Os02g0685900	C22384	-	Calcium dependent protein kinase	1e-16	At4g38230	CPK26	O.I.	H.G.	S.X.
0.12	7.2	0.91	Os10g0510400	AK100601.1	-	Putative methyltransferase DUF248 family protein	1e-3	At1g33170	dehydration-responsive family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.7 98.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.2 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
16.7	98.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
8.2	97.7	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2	97.7	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9	97.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5	97.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4	97.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8	97.3	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8	97.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6	97.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the maize gene, Zm.1800.1.S1_at, orthologous to the query gene, Os04g0608900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 100.0 Zm.1800.1.S1_at At4g31170 serine/threonine protein kinase - 3e-7 At2g24360 serine/threonine/tyrosine kinase, putative O.I. H.G. S.X.
0.59 76.1 Zm.15278.1.S1_at At4g31170 hypothetical protein LOC100278126 - 1e+1 At4g16380 metal ion binding O.I. H.G. S.X.
0.53 69.1 Zm.13931.1.A1_x_at At4g31170 - - 8e-1 At1g09630 ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) O.I. H.G. S.X.
0.52 67.3 ZmAffx.897.1.S1_at At4g31170 - - 2e-1 At2g12170 unknown protein O.I. H.G. S.X.
0.48 61.3 ZmAffx.831.1.A1_at At4g31170 Hypothetical protein LOC100191667 - 2e-1 At1g21900 emp24/gp25L/p24 family protein O.I. H.G. S.X.
0.44 55.7 Zm.3283.2.A1_a_at At4g31170 hypothetical protein LOC100192072 - 2e+0 At3g46110 unknown protein O.I. H.G. S.X.
0.40 48.5 - - - - - - O.I. H.G. S.X.
0.40 48.5 Zm.13958.1.A1_at At4g31170 - - 3e-3 At2g15290 TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21) O.I. H.G. S.X.
0.39 45.6 Zm.15605.1.S1_at At4g31170 isopenicillin N epimerase - 2e-2 At3g62130 epimerase-related O.I. H.G. S.X.
0.36 41.3 Zm.7023.2.A1_at At4g31170 - - 9e-1 At2g27250 CLV3 (CLAVATA3) O.I. H.G. S.X.
0.35 38.9 Zm.7840.1.A1_at At4g31170 - - 5e+0 At2g31350 GLX2-5 (GLYOXALASE 2-5) O.I. H.G. S.X.
0.32 33.4 Zm.8469.1.A1_at At4g31170 - - 1e+0 At5g20970 heat shock family protein O.I. H.G. S.X.
0.32 33.4 Zm.9900.1.A1_at At4g31170 - - 2e-2 At5g28610 - O.I. H.G. S.X.
0.31 31.6 Zm.14120.1.S1_at At4g31170 - - 7e-30 At1g71220 EBS1 (EMS-mutagenized bri1 suppressor 1) O.I. H.G. S.X.
0.30 29.8 Zm.9285.1.A1_at At4g31170 disease resistance response protein 206 - 6e+0 At5g46874 - O.I. H.G. S.X.
0.29 28.1 Zm.13855.1.A1_at At4g31170 glycine cleavage complex T-protein - 7e-47 At1g11860 aminomethyltransferase, putative O.I. H.G. S.X.
0.29 28.1 Zm.8214.1.A1_at At4g31170 hypothetical protein LOC100279596 - 2e-6 At5g58900 myb family transcription factor O.I. H.G. S.X.
0.28 28.1 Zm.3930.1.S1_at At4g31170 AMP-binding protein - 8e-37 At3g05970 LACS6 (long-chain acyl-CoA synthetase 6) O.I. H.G. S.X.
0.28 28.1 Zm.4471.5.A1_at At4g31170 protein kinase APK1B - 2e-2 At3g47510 unknown protein O.I. H.G. S.X.
0.27 24.6 Zm.16059.1.S1_at At4g31170 programmed cell death protein 5 - 3e-5 At1g29850 double-stranded DNA-binding family protein O.I. H.G. S.X.
0.27 24.6 ZmAffx.1030.1.S1_at At4g31170 - - 8e-1 At2g03830 unknown protein O.I. H.G. S.X.
0.26 22.7 Zm.346.1.S1_a_at At4g31170 retinoblastoma-related protein 2a - 2e-6 At3g12280 RBR1 (RETINOBLASTOMA-RELATED 1) O.I. H.G. S.X.
0.26 22.7 Zm.8846.1.A1_at At4g31170 - - 4e+0 At3g29250 copper ion binding / oxidoreductase O.I. H.G. S.X.
0.25 21.3 Zm.19280.1.S1_at At4g31170 hypothetical protein LOC100276261 - 4e-6 At5g39660 CDF2 (CYCLING DOF FACTOR 2) O.I. H.G. S.X.
0.24 19.8 Zm.280.1.A1_at At4g31170 Binding protein homolog1 - 0 At5g42020 BIP2 O.I. H.G. S.X.
0.23 18.6 Zm.17512.1.S1_at At4g31170 hypothetical protein LOC100192897 - 2e-9 At4g25590 ADF7 (actin depolymerizing factor 7) O.I. H.G. S.X.
0.23 18.6 Zm.16630.1.A1_at At4g31170 - - 1e+1 At5g60580 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.23 18.6 ZmAffx.1059.1.A1_at At4g31170 - - 3e+0 At5g28750 thylakoid assembly protein, putative O.I. H.G. S.X.
0.23 18.6 Zm.6929.1.A1_a_at At4g31170 CDPK substrate protein 1 - 3e-5 At5g29000 myb family transcription factor O.I. H.G. S.X.
0.22 16.9 ZmAffx.1188.1.A1_at At4g31170 - - 3e+0 At5g46620 unknown protein O.I. H.G. S.X.
0.22 16.9 Zm.4774.1.A1_at At4g31170 hypothetical protein LOC100191958 - 1e+0 At3g26360 unknown protein O.I. H.G. S.X.
0.21 15.5 Zm.1574.1.S1_at At4g31170 - - 6e-20 At2g24320 unknown protein O.I. H.G. S.X.
0.17 10.6 ZmAffx.1118.1.A1_at At4g31170 - - 3e+0 At5g66330 leucine-rich repeat family protein O.I. H.G. S.X.
0.15 8.6 ZmAffx.88.1.S1_at At4g31170 - - 3e+0 At5g35375 unknown protein O.I. H.G. S.X.
0.14 7.7 Zm.3972.2.A1_at At4g31170 - - 5e-66 At5g43010 RPT4A O.I. H.G. S.X.
0.14 7.7 Zm.9060.1.A1_at At4g31170 hypothetical protein LOC100274301 - 1e+0 At5g57370 unknown protein O.I. H.G. S.X.
0.13 6.8 ZmAffx.1103.1.S1_at At4g31170 - - 1e+1 At5g43700 ATAUX2-11 (AUXIN INDUCIBLE 2-11) O.I. H.G. S.X.
0.13 6.8 Zm.8600.1.S1_at At4g31170 - - 6e-2 At5g52200 unknown protein O.I. H.G. S.X.
0.12 5.9 Zm.2012.1.S1_at At4g31170 - - 8e+0 At5g23220 NIC3 (NICOTINAMIDASE 3) O.I. H.G. S.X.
0.10 4.6 Zm.2034.1.S1_at At4g31170 hypothetical protein LOC100277458 - 1e+0 At1g18800 NRP2 (NAP1-RELATED PROTEIN 2) O.I. H.G. S.X.
0.04 1.5 Zm.13662.1.A1_at At4g31170 - - 4e+0 At2g40740 WRKY55 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	100.0	Zm.1800.1.S1_at	At4g31170	serine/threonine protein kinase	-	3e-7	At2g24360	serine/threonine/tyrosine kinase, putative	O.I.	H.G.	S.X.
0.59	76.1	Zm.15278.1.S1_at	At4g31170	hypothetical protein LOC100278126	-	1e+1	At4g16380	metal ion binding	O.I.	H.G.	S.X.
0.53	69.1	Zm.13931.1.A1_x_at	At4g31170	-	-	8e-1	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	O.I.	H.G.	S.X.
0.52	67.3	ZmAffx.897.1.S1_at	At4g31170	-	-	2e-1	At2g12170	unknown protein	O.I.	H.G.	S.X.
0.48	61.3	ZmAffx.831.1.A1_at	At4g31170	Hypothetical protein LOC100191667	-	2e-1	At1g21900	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.
0.44	55.7	Zm.3283.2.A1_a_at	At4g31170	hypothetical protein LOC100192072	-	2e+0	At3g46110	unknown protein	O.I.	H.G.	S.X.
0.40	48.5		-	-	-	-	-	-	O.I.	H.G.	S.X.
0.40	48.5	Zm.13958.1.A1_at	At4g31170	-	-	3e-3	At2g15290	TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)	O.I.	H.G.	S.X.
0.39	45.6	Zm.15605.1.S1_at	At4g31170	isopenicillin N epimerase	-	2e-2	At3g62130	epimerase-related	O.I.	H.G.	S.X.
0.36	41.3	Zm.7023.2.A1_at	At4g31170	-	-	9e-1	At2g27250	CLV3 (CLAVATA3)	O.I.	H.G.	S.X.
0.35	38.9	Zm.7840.1.A1_at	At4g31170	-	-	5e+0	At2g31350	GLX2-5 (GLYOXALASE 2-5)	O.I.	H.G.	S.X.
0.32	33.4	Zm.8469.1.A1_at	At4g31170	-	-	1e+0	At5g20970	heat shock family protein	O.I.	H.G.	S.X.
0.32	33.4	Zm.9900.1.A1_at	At4g31170	-	-	2e-2	At5g28610	-	O.I.	H.G.	S.X.
0.31	31.6	Zm.14120.1.S1_at	At4g31170	-	-	7e-30	At1g71220	EBS1 (EMS-mutagenized bri1 suppressor 1)	O.I.	H.G.	S.X.
0.30	29.8	Zm.9285.1.A1_at	At4g31170	disease resistance response protein 206	-	6e+0	At5g46874	-	O.I.	H.G.	S.X.
0.29	28.1	Zm.13855.1.A1_at	At4g31170	glycine cleavage complex T-protein	-	7e-47	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.
0.29	28.1	Zm.8214.1.A1_at	At4g31170	hypothetical protein LOC100279596	-	2e-6	At5g58900	myb family transcription factor	O.I.	H.G.	S.X.
0.28	28.1	Zm.3930.1.S1_at	At4g31170	AMP-binding protein	-	8e-37	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	O.I.	H.G.	S.X.
0.28	28.1	Zm.4471.5.A1_at	At4g31170	protein kinase APK1B	-	2e-2	At3g47510	unknown protein	O.I.	H.G.	S.X.
0.27	24.6	Zm.16059.1.S1_at	At4g31170	programmed cell death protein 5	-	3e-5	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.
0.27	24.6	ZmAffx.1030.1.S1_at	At4g31170	-	-	8e-1	At2g03830	unknown protein	O.I.	H.G.	S.X.
0.26	22.7	Zm.346.1.S1_a_at	At4g31170	retinoblastoma-related protein 2a	-	2e-6	At3g12280	RBR1 (RETINOBLASTOMA-RELATED 1)	O.I.	H.G.	S.X.
0.26	22.7	Zm.8846.1.A1_at	At4g31170	-	-	4e+0	At3g29250	copper ion binding / oxidoreductase	O.I.	H.G.	S.X.
0.25	21.3	Zm.19280.1.S1_at	At4g31170	hypothetical protein LOC100276261	-	4e-6	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	O.I.	H.G.	S.X.
0.24	19.8	Zm.280.1.A1_at	At4g31170	Binding protein homolog1	-	0	At5g42020	BIP2	O.I.	H.G.	S.X.
0.23	18.6	Zm.17512.1.S1_at	At4g31170	hypothetical protein LOC100192897	-	2e-9	At4g25590	ADF7 (actin depolymerizing factor 7)	O.I.	H.G.	S.X.
0.23	18.6	Zm.16630.1.A1_at	At4g31170	-	-	1e+1	At5g60580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.23	18.6	ZmAffx.1059.1.A1_at	At4g31170	-	-	3e+0	At5g28750	thylakoid assembly protein, putative	O.I.	H.G.	S.X.
0.23	18.6	Zm.6929.1.A1_a_at	At4g31170	CDPK substrate protein 1	-	3e-5	At5g29000	myb family transcription factor	O.I.	H.G.	S.X.
0.22	16.9	ZmAffx.1188.1.A1_at	At4g31170	-	-	3e+0	At5g46620	unknown protein	O.I.	H.G.	S.X.
0.22	16.9	Zm.4774.1.A1_at	At4g31170	hypothetical protein LOC100191958	-	1e+0	At3g26360	unknown protein	O.I.	H.G.	S.X.
0.21	15.5	Zm.1574.1.S1_at	At4g31170	-	-	6e-20	At2g24320	unknown protein	O.I.	H.G.	S.X.
0.17	10.6	ZmAffx.1118.1.A1_at	At4g31170	-	-	3e+0	At5g66330	leucine-rich repeat family protein	O.I.	H.G.	S.X.
0.15	8.6	ZmAffx.88.1.S1_at	At4g31170	-	-	3e+0	At5g35375	unknown protein	O.I.	H.G.	S.X.
0.14	7.7	Zm.3972.2.A1_at	At4g31170	-	-	5e-66	At5g43010	RPT4A	O.I.	H.G.	S.X.
0.14	7.7	Zm.9060.1.A1_at	At4g31170	hypothetical protein LOC100274301	-	1e+0	At5g57370	unknown protein	O.I.	H.G.	S.X.
0.13	6.8	ZmAffx.1103.1.S1_at	At4g31170	-	-	1e+1	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	O.I.	H.G.	S.X.
0.13	6.8	Zm.8600.1.S1_at	At4g31170	-	-	6e-2	At5g52200	unknown protein	O.I.	H.G.	S.X.
0.12	5.9	Zm.2012.1.S1_at	At4g31170	-	-	8e+0	At5g23220	NIC3 (NICOTINAMIDASE 3)	O.I.	H.G.	S.X.
0.10	4.6	Zm.2034.1.S1_at	At4g31170	hypothetical protein LOC100277458	-	1e+0	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.
0.04	1.5	Zm.13662.1.A1_at	At4g31170	-	-	4e+0	At2g40740	WRKY55	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Os04g0608900
Gene name
Homology with Arabidopsis	Similar to At4g31170: protein kinase family protein (HF=3e-10)
Module size	6 genes
NF	0.27
%ile	27.3

Co-expression analysis

Gene ID Os04g0608900 Gene name Homology with ArabidopsisSimilar to At4g31170: protein kinase family protein (HF=3e-10) Module size 6 genes NF 0.27 %ile 27.3

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Os04g0608900

Gene name
Homology with Arabidopsis Similar to At4g31170: protein kinase family protein (HF=3e-10)

Module size 6 genes

NF 0.27

%ile 27.3

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera