CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0600800

Gene name
Homology with Arabidopsis Similar to At4g27630: GTG2 (GPCR-TYPE G PROTEIN 2) (HF=1e-25)

Module size 7 genes

NF 0.42

%ile 52.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.97 Os04g0600800 9632.m04940 - Conserved hypothetical protein 1e-25 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) O.I. H.G. S.X.
0.57 77.0 0.97 Os09g0515800 AK066076.1 - RabGAP/TBC domain containing protein 3e-19 At2g30710 RabGAP/TBC domain-containing protein O.I. H.G. S.X.
0.53 71.3 0.97 Os08g0427300 AK066491.1 - Conserved hypothetical protein 3e-7 At1g16020 unknown protein O.I. H.G. S.X.
0.40 51.1 0.97 Os02g0677700 AK119947.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 7e-3 At5g51980 WD-40 repeat family protein / zfwd2 protein (ZFWD2), putative O.I. H.G. S.X.
0.33 38.8 0.97 Os05g0436400 AK120229.1 - Peptidase A22B, minor histocompatibility antigenH13 family protein 2e-32 At2g03120 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) O.I. H.G. S.X.
0.31 34.5 0.97 Os04g0195000 AK073992.1 - Vacuolar assembly protein VPS41 homolog 2e-24 At1g08190 vacuolar assembly protein, putative (VPS41) O.I. H.G. S.X.
0.30 32.7 0.97 Os01g0945800 AK072850.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-17 At4g36960 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.5 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.8 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.2 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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