Co-expression analysis

Gene ID Os04g0600400
Gene name
Homology with ArabidopsisSimilar to At2g35470: unknown protein (HF=6e-1)
Module size 7 genes
NF 0.42
%ile 52.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.94Os04g0600400AK072894.1-Conserved hypothetical protein6e-1At2g35470unknown proteinO.I.H.G.S.X.
0.5573.70.94Os06g0300300AK068813.1-Conserved hypothetical protein2e-3At4g26550-O.I.H.G.S.X.
0.5371.30.95Os06g0608600AK061418.1-Conserved hypothetical protein9e-3At5g56020-O.I.H.G.S.X.
0.4458.10.94Os07g0118300AU222757-Conserved hypothetical protein3e-5At4g33625unknown proteinO.I.H.G.S.X.
0.4051.10.94Os05g0279600AK070566.1-Conserved hypothetical protein3e-9At4g30900-O.I.H.G.S.X.
0.3134.50.94Os03g0127000AK068479.1-Conserved hypothetical protein7e-1At1g32880importin alpha-1 subunit, putativeO.I.H.G.S.X.
0.2727.50.94Os04g0687300AK060617.1-Heat shock protein DnaJ, N-terminal domaincontaining protein7e-1At3g08000RNA-binding protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.599.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.998.3GSM100446Rice Bala 1ppm Arsenate Rep2GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
9.297.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.097.6GSM174886F FR13 4 dpi rep 1 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe griseaLink to GEO
6.697.3GSM174889H FR13 4 dpi rep 2 with array type rice from AffymetrixGSE7256Identification of rice genes differentially expressed upon virulent infection by Magnaporthe griseaLink to GEO
6.497.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM149410Rice Azucena 1ppm Arsenate Rep3GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
5.897.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.696.9GSM302914emb6D_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
5.696.9GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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