CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0598200

Gene name
Homology with Arabidopsis Similar to At3g53430: 60S ribosomal protein L12 (RPL12B) (HF=2e-21)

Module size 6 genes

NF 0.56

%ile 75.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os04g0598200 BX897823 - 60S ribosomal protein L12 2e-21 At3g53430 60S ribosomal protein L12 (RPL12B) O.I. H.G. S.X.
0.73 91.1 0.98 Os06g0701400 AK121229.1 - 60S acidic ribosomal protein P3 (P1/P2-like) (P3A) 1e-1 At3g28560 - O.I. H.G. S.X.
0.50 68.0 0.99 Os02g0534800 AK101459.1 - 40S ribosomal protein S14 (Clone MCH2) 3e-67 At3g11510 40S ribosomal protein S14 (RPS14B) O.I. H.G. S.X.
0.46 60.9 0.98 Os03g0598800 AK066806.1 - 60S ribosomal protein L15 5e-50 At4g17390 60S ribosomal protein L15 (RPL15B) O.I. H.G. S.X.
0.46 60.9 0.99 Os03g0141000 AK120267.1 - 60S ribosomal protein L21 5e-21 At1g09690 60S ribosomal protein L21 (RPL21C) O.I. H.G. S.X.
0.34 40.0 0.98 Os01g0205500 AK067763.1 - 60S ribosomal protein L11-2 (L16). Splice isoform2 1e-109 At4g18730 RPL16B O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.6 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.4 99.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.4 99.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.065 1 GO:0006414 The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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