CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0590400

Gene name
Homology with Arabidopsis Similar to At1g07520: scarecrow transcription factor family protein (HF=6e-6)

Module size 6 genes

NF 0.26

%ile 25.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.91 Os04g0590400 AK100784.1 - GRAS transcription factor domain containingprotein 6e-6 At1g07520 scarecrow transcription factor family protein O.I. H.G. S.X.
0.44 58.1 0.92 Os06g0251200 AK067034.1 - MATH domain containing protein 1e+0 At5g46530 - O.I. H.G. S.X.
0.43 55.4 0.92 Os01g0347100 CA763426 - Protein of unknown function DUF1399 family protein 5e-3 At1g56230 unknown protein O.I. H.G. S.X.
0.36 44.0 0.91 Os02g0150700 AK120070.1 - Zn-finger, RING domain containing protein 5e-3 At5g10650 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.13 8.2 0.91 Os04g0692800 AK103159.1 - Conserved hypothetical protein 9e-1 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) O.I. H.G. S.X.
0.12 7.2 0.92 Os12g0641100 AK100537.1 - Sodium/hydrogen exchanger family protein 8e-2 At1g14660 ATNHX8 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
71.2 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
19.4 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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