CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0588700

Gene name
Homology with Arabidopsis Similar to At3g59140: ATMRP14 (HF=9e-6)

Module size 6 genes

NF 0.48

%ile 62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.89 Os04g0588700 AK099941.1 - ABC transporter, transmembrane region domaincontaining protein 9e-6 At3g59140 ATMRP14 O.I. H.G. S.X.
0.61 81.2 0.87 Os01g0680200 AK121881.1 - - 2e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.50 68.0 0.89 Os12g0454800 AY572461.1 - Histidine kinase 7e-3 At5g10530 lectin protein kinase, putative O.I. H.G. S.X.
0.50 68.0 0.89 Os12g0490000 CA762266 - Mitochodrial transcription terminationfactor-related family protein 5e+0 At4g08170 inositol 1,3,4-trisphosphate 5/6-kinase family protein O.I. H.G. S.X.
0.40 51.1 0.88 Os01g0740500 9629.m05236 - Transferrin receptor-like dimerisation regiondomain containing protein 2e-5 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) O.I. H.G. S.X.
0.19 15.1 0.87 Os02g0579600 AY177696.1 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.9 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.7 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.5 99.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.9 99.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.1 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.6 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1617849_at, orthologous to the query gene, Os04g0588700

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.7 1617849_at At3g59140 hypothetical protein LOC100253698 - 2e-19 At2g47800 ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4) O.I. H.G. S.X.
0.46 66.5 1611063_at At3g59140 hypothetical protein LOC100246364 - 5e-5 At1g17100 SOUL heme-binding family protein O.I. H.G. S.X.
0.40 57.7 1611392_at At3g59140 hypothetical protein LOC100246263 - 5e+0 At3g03430 polcalcin, putative / calcium-binding pollen allergen, putative O.I. H.G. S.X.
0.33 45.7 1613273_at At3g59140 hypothetical protein LOC100247422 - 3e-4 At1g73650 oxidoreductase, acting on the CH-CH group of donors O.I. H.G. S.X.
0.25 30.5 1606451_at At3g59140 - - 4e+0 At5g35890 beta-galactosidase O.I. H.G. S.X.
0.10 10.3 1622811_at At3g59140 hypothetical protein LOC100240884 - 3e-11 At1g64900 CYP89A2 (CYTOCHROME P450 89A2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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