CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0584600

Gene name
Homology with Arabidopsis Similar to At2g17290: CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) (HF=3e-44)

Module size 7 genes

NF 0.61

%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.94 Os04g0584600 AB042550.1 - Calcium dependent protein kinase 3e-44 At2g17290 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) O.I. H.G. S.X.
0.77 93.1 0.94 Os01g0261200 AB028187.1 - No apical meristem (NAM) protein domain containingprotein 7e-5 At3g10490 anac052 (Arabidopsis NAC domain containing protein 52) O.I. H.G. S.X.
0.60 79.7 0.95 Os01g0672400 AK064817.1 - Drought induced 19 family protein 3e-1 At4g32090 galactosyltransferase O.I. H.G. S.X.
0.56 76.3 0.93 Os01g0908700 AK120427.1 - Heterogeneous nuclear ribonucleoprotein A2 homolog1 (hnRNP A2(A)) 2e-17 At1g67800 copine-related O.I. H.G. S.X.
0.56 76.3 0.93 Os05g0473500 AK101630.1 - Exo70 exocyst complex subunit family protein 5e+0 At2g48130 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.53 71.3 0.93 Os01g0748900 AK071946.1 - Membrane attack complexcomponent/perforin/complement C9 family protein 3e-4 At1g29690 CAD1 (constitutively activated cell death 1) O.I. H.G. S.X.
0.44 58.1 0.93 Os01g0814400 AK069730.1 - Hypothetical protein 2e-2 At2g37480 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.6 99.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.9 99.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.3 98.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.5 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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