CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0578200

Gene name
Homology with Arabidopsis Similar to At3g12977: DNA binding (HF=6e-1)

Module size 14 genes

NF 0.65

%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.92 Os04g0578200 AK073300.1 - Conserved hypothetical protein 6e-1 At3g12977 DNA binding O.I. H.G. S.X.
0.88 96.8 0.94 Os10g0560400 AK109732.1 - CCT domain containing protein 1e-2 At3g26400 EIF4B1 O.I. H.G. S.X.
0.81 94.8 0.93 Os09g0553900 AK099586.1 - - 2e+0 At5g59040 COPT3 O.I. H.G. S.X.
0.72 89.8 0.95 Os01g0235100 CF297014 - Conserved hypothetical protein 2e+0 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) O.I. H.G. S.X.
0.71 89.6 0.94 Os01g0666600 CF325024 - Conserved hypothetical protein 5e+0 At3g58380 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.61 81.2 0.95 Os05g0170900 CB679962 - Phosphate/phosphoenolpyruvate translocator 1e-1 At2g30766 unknown protein O.I. H.G. S.X.
0.61 81.2 0.94 Os03g0228200 9631.m01196 - Conserved hypothetical protein 2e-2 At2g23790 unknown protein O.I. H.G. S.X.
0.61 81.2 0.94 Os04g0583000 AK065769.1 - TPR-like domain containing protein 7e-2 At4g02380 SAG21 (SENESCENCE-ASSOCIATED GENE 21) O.I. H.G. S.X.
0.60 79.7 0.94 Os12g0626400 AK063967.1 - Squalene/phytoene synthase family protein 7e-10 At5g17230 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase O.I. H.G. S.X.
0.59 78.0 0.95 Os08g0566600 AK066210.1 - Conserved hypothetical protein 3e-2 At2g05620 PGR5 (proton gradient regulation 5) O.I. H.G. S.X.
0.56 76.3 0.93 Os10g0573700 AK099409.1 - - 2e-4 At5g46800 BOU (A BOUT DE SOUFFLE) O.I. H.G. S.X.
0.55 73.7 0.93 Os06g0704700 AK120907.1 - Conserved hypothetical protein 1e-34 At1g16720 HCF173 (high chlorophyll fluorescence phenotype 173) O.I. H.G. S.X.
0.48 63.7 0.96 Os05g0582300 AK101790.1 - Solanesyl diphosphate synthase 2e-17 At1g17050 SPS2 (Solanesyl diphosphate synthase 2) O.I. H.G. S.X.
0.42 53.9 0.95 Os08g0432500 AK106170.1 - ATP-dependent Clp protease adaptor protein ClpSfamily protein 3e-2 At3g61678 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.8 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.0 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.014 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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