Co-expression analysis

Gene ID Os04g0570800
Gene name
Homology with ArabidopsisSimilar to At4g00750: dehydration-responsive family protein (HF=1e-4)
Module size 6 genes
NF 0.33
%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5371.30.88Os04g0570800AK099906.1-Putative methyltransferase DUF248 family protein1e-4At4g00750dehydration-responsive family proteinO.I.H.G.S.X.
0.5068.00.89Os06g0566500AK063099.1-Hypothetical protein2e+0At5g13910LEP (LEAFY PETIOLE)O.I.H.G.S.X.
0.4660.90.88Os04g0563000CA763943-Conserved hypothetical protein2e+0At5g63595FLS4 (FLAVONOL SYNTHASE 4)O.I.H.G.S.X.
0.4051.10.89Os01g0243400AK070651.1-Hypothetical protein1e+0At1g69410ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)O.I.H.G.S.X.
0.1813.70.89Os10g0479900AU086009-Transcriptional factor B3 family protein1e-6At2g28350ARF10 (AUXIN RESPONSE FACTOR 10)O.I.H.G.S.X.
0.1510.30.89Os05g0272900AK107093.1-B-cell receptor-associated 31-like family protein1e-1At1g11905-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.599.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
24.699.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
23.499.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
22.599.3GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
20.999.2GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.899.1GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.899.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.499.0GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.499.0GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.899.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0201GO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.Link to AmiGO
0.0121GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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