CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0570800

Gene name
Homology with Arabidopsis Similar to At4g00750: dehydration-responsive family protein (HF=1e-4)

Module size 6 genes

NF 0.33

%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.88 Os04g0570800 AK099906.1 - Putative methyltransferase DUF248 family protein 1e-4 At4g00750 dehydration-responsive family protein O.I. H.G. S.X.
0.50 68.0 0.89 Os06g0566500 AK063099.1 - Hypothetical protein 2e+0 At5g13910 LEP (LEAFY PETIOLE) O.I. H.G. S.X.
0.46 60.9 0.88 Os04g0563000 CA763943 - Conserved hypothetical protein 2e+0 At5g63595 FLS4 (FLAVONOL SYNTHASE 4) O.I. H.G. S.X.
0.40 51.1 0.89 Os01g0243400 AK070651.1 - Hypothetical protein 1e+0 At1g69410 ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) O.I. H.G. S.X.
0.18 13.7 0.89 Os10g0479900 AU086009 - Transcriptional factor B3 family protein 1e-6 At2g28350 ARF10 (AUXIN RESPONSE FACTOR 10) O.I. H.G. S.X.
0.15 10.3 0.89 Os05g0272900 AK107093.1 - B-cell receptor-associated 31-like family protein 1e-1 At1g11905 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.5 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.6 99.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.4 99.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.9 99.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.8 99.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.4 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.4 99.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.8 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.020 1 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
0.012 1 GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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