CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0566500

Gene name
Homology with Arabidopsis Similar to At1g48410: AGO1 (ARGONAUTE 1) (HF=2e-52)

Module size 8 genes

NF 0.21

%ile 19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.92 Os04g0566500 AK102911.1 - Argonaute and Dicer protein, PAZ domain containingprotein 2e-52 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.
0.40 51.1 0.93 Os01g0125600 AK105015.2 - Heavy metal transport/detoxification proteindomain containing protein 2e-7 At3g06130 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.33 38.8 0.93 Os03g0762900 AK068645.1 - Protein of unknown function DUF566 family protein 3e-1 At4g29800 PLP8 (PATATIN-LIKE PROTEIN 8) O.I. H.G. S.X.
0.19 15.1 0.92 Os05g0420500 AK070104.1 - Conserved hypothetical protein 2e+0 At1g68580 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein O.I. H.G. S.X.
0.19 15.1 0.92 Os02g0831600 AB081951.1 - AGO1 homologous protein 2e-21 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.
0.18 13.7 0.92 Os02g0290500 AK065628.1 - Ubiquitin domain containing protein 2e-9 At1g64460 phosphatidylinositol 3- and 4-kinase family protein O.I. H.G. S.X.
0.15 10.3 0.93 Os05g0430200 AK059420.1 - Deoxynucleoside kinase family protein 4e-46 At1g72040 deoxynucleoside kinase family O.I. H.G. S.X.
0.12 7.2 0.92 Os03g0308200 AK062228.1 - ARM repeat fold domain containing protein 5e-7 At5g26850 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.8 99.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.7 98.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 1 GO:0006139 The chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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