CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0566400

Gene name
Homology with Arabidopsis Similar to At1g14580: zinc finger (C2H2 type) family protein (HF=9e-30)

Module size 14 genes

NF 0.18

%ile 16.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.88 Os04g0566400 CB669008 - Zn-finger, C2H2 type domain containing protein 9e-30 At1g14580 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.35 41.7 0.94 Os01g0107900 AK070363.1 - Hypothetical protein 2e-2 At1g27510 - O.I. H.G. S.X.
0.32 36.3 0.91 Os02g0793900 AK102581.1 - Conserved hypothetical protein 4e-11 At1g80940 unknown protein O.I. H.G. S.X.
0.29 31.1 0.92 Os03g0822200 AK069405.1 - Conserved hypothetical protein 7e-16 At5g02240 binding / catalytic/ coenzyme binding O.I. H.G. S.X.
0.27 27.5 0.92 Os04g0534500 AK105805.1 - Conserved hypothetical protein 3e+0 At5g14550 unknown protein O.I. H.G. S.X.
0.26 25.6 0.94 Os02g0125100 AK101889.1 - Cis-homoaconitase family protein 1e-24 At4g13430 IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) O.I. H.G. S.X.
0.25 24.1 0.92 Os04g0467700 AK101835.1 - Indole-3-glycerol phosphate synthase, chloroplastprecursor (EC 4.1.1.48) (IGPS) 1e-11 At5g48220 indole-3-glycerol phosphate synthase, putative O.I. H.G. S.X.
0.17 12.6 0.92 Os10g0415600 AK066606.1 - Acylamino acid-releasing enzyme 4e-1 At4g14570 acylaminoacyl-peptidase-related O.I. H.G. S.X.
0.17 12.6 0.94 Os02g0830100 AK065077.1 - Oligopeptidase A 7e-24 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein O.I. H.G. S.X.
0.17 12.6 0.93 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein O.I. H.G. S.X.
0.16 11.3 0.93 Os07g0646300 AK066044.1 - Conserved hypothetical protein 9e-1 At3g11630 2-cys peroxiredoxin, chloroplast (BAS1) O.I. H.G. S.X.
0.12 7.2 0.91 Os12g0583400 AK102589.1 - Conserved hypothetical protein 3e-2 At5g16660 unknown protein O.I. H.G. S.X.
0.12 7.2 0.91 Os01g0970600 NM_189450.1 - DEAD/DEAH box helicase, N-terminal domaincontaining protein 9e-2 At3g06890 unknown protein O.I. H.G. S.X.
0.08 4.2 0.91 Os08g0482100 AK065903.1 - Conserved hypothetical protein 5e-10 At3g11560 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.6 98.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.1 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.091 1 GO:0006568 The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
0.034 1 GO:0006520 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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