Co-expression analysis

Gene ID Os04g0565900
Gene name
Homology with ArabidopsisSimilar to At1g61660: basic helix-loop-helix (bHLH) family protein (HF=2e-1)
Module size 7 genes
NF 0.60
%ile 82.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7391.10.90Os04g0565900AK109094.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein2e-1At1g61660basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6181.20.88Os09g0486700AK105294.1-Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)(Phototropin)6e-5At3g20830protein kinase family proteinO.I.H.G.S.X.
0.6079.70.90Os08g04629009636.m03626-Protein of unknown function DUF716 family protein5e-1At3g50580unknown proteinO.I.H.G.S.X.
0.5676.30.88Os06g0691800AK065392.1--1e-4At2g47060serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.5573.70.89Os08g01670009636.m00636-ABC transporter related domain containing protein2e-8At1g31770ABC transporter family proteinO.I.H.G.S.X.
0.4051.10.90Os09g0474000AK108319.1-Basic-leucine zipper (bZIP) transcription factordomain containing protein2e+0At2g23290AtMYB70 (myb domain protein 70)O.I.H.G.S.X.
0.4051.10.91Os09g0423400AK072133.1-Biopterin transport-related protein BT1 familyprotein3e-4At5g10820integral membrane transporter family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.099.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
19.999.1GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.398.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.498.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.998.1GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.898.1GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.198.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.898.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0131GO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.23629.1.S1_at, orthologous to the query gene, Os04g0565900

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6HgAffx.23629.1.S1_atAt1g61660--2e+0At3g21150zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.3650.8PsAffx.psZG005xN22f_s_atAt1g61660--9e+0At5g14602unknown proteinO.I.H.G.S.X.
0.2939.0PsAffx.C86000041_atAt1g61660--2e-1At1g31330PSAF (photosystem I subunit F)O.I.H.G.S.X.
0.0811.0PsAffx.C1023000002_atAt1g61660--3e+0At4g21540SPHK1 (SPHINGOSINE KINASE 1)O.I.H.G.S.X.
0.001.4Gma.5793.4.S1_x_atAt1g61660--8e-19At3g61430PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)O.I.H.G.S.X.
0.001.4GmaAffx.92838.1.S1_s_atAt1g61660hydroxyproline-rich glycoprotein-3e-2At1g23720proline-rich extensin-like family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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