CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0565900

Gene name
Homology with Arabidopsis Similar to At1g61660: basic helix-loop-helix (bHLH) family protein (HF=2e-1)

Module size 7 genes

NF 0.60

%ile 82.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.90 Os04g0565900 AK109094.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At1g61660 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.61 81.2 0.88 Os09g0486700 AK105294.1 - Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)(Phototropin) 6e-5 At3g20830 protein kinase family protein O.I. H.G. S.X.
0.60 79.7 0.90 Os08g0462900 9636.m03626 - Protein of unknown function DUF716 family protein 5e-1 At3g50580 unknown protein O.I. H.G. S.X.
0.56 76.3 0.88 Os06g0691800 AK065392.1 - - 1e-4 At2g47060 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.55 73.7 0.89 Os08g0167000 9636.m00636 - ABC transporter related domain containing protein 2e-8 At1g31770 ABC transporter family protein O.I. H.G. S.X.
0.40 51.1 0.90 Os09g0474000 AK108319.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 2e+0 At2g23290 AtMYB70 (myb domain protein 70) O.I. H.G. S.X.
0.40 51.1 0.91 Os09g0423400 AK072133.1 - Biopterin transport-related protein BT1 familyprotein 3e-4 At5g10820 integral membrane transporter family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.9 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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