| Gene ID | Os04g0561600 |
| Gene name | |
| Homology with Arabidopsis | Similar to At1g16210: unknown protein (HF=6e-10) |
| Module size | 29 genes |
| NF | 0.26 |
| %ile | 26.2 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.97 | 99.9 | 0.93 | Os04g0561600 | AK068927.1 | - | Protein of unknown function DUF1014 family protein | 6e-10 | At1g16210 | unknown protein | O.I. | H.G. | S.X. | |
| 0.42 | 53.9 | 0.96 | Os05g0455600 | AK060152.1 | - | Prenylated rab acceptor PRA1 family protein | 1e-2 | At5g02040 | PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1) | O.I. | H.G. | S.X. | |
| 0.41 | 52.4 | 0.96 | Os08g0127700 | AK121348.1 | - | Conserved hypothetical protein | 2e-48 | At4g37120 | SMP2 | O.I. | H.G. | S.X. | |
| 0.39 | 48.3 | 0.96 | Os01g0254900 | AK068204.1 | - | Syntaxin | 1e-5 | At5g46860 | VAM3 | O.I. | H.G. | S.X. | |
| 0.39 | 48.3 | 0.96 | Os06g0183900 | AK102112.1 | - | Protein of unknown function DUF602 family protein | 1e+1 | Atmg00516 | - | O.I. | H.G. | S.X. | |
| 0.39 | 48.3 | 0.96 | Os03g0861800 | AK109388.2 | - | Cyclin-like F-box domain containing protein | 1e-2 | At5g66540 | - | O.I. | H.G. | S.X. | |
| 0.36 | 44.0 | 0.96 | Os01g0857700 | AK066959.1 | - | Cell cycle control protein cwf14 | 2e-19 | At4g21110 | G10 family protein | O.I. | H.G. | S.X. | |
| 0.35 | 41.7 | 0.96 | Os02g0184500 | AK105238.1 | - | - | 7e-4 | At5g32440 | - | O.I. | H.G. | S.X. | |
| 0.35 | 41.7 | 0.96 | Os03g0626800 | AK112092.1 | - | - | 2e-50 | At5g55990 | CBL2 (CALCINEURIN B-LIKE 2) | O.I. | H.G. | S.X. | |
| 0.35 | 41.7 | 0.94 | Os06g0152200 | AB001886.1 | - | Salt-tolerance protein | 7e-1 | At5g45390 | CLPP4 (CLP PROTEASE P4) | O.I. | H.G. | S.X. | |
| 0.33 | 38.8 | 0.96 | Os02g0721600 | AK111506.1 | - | WD-repeat protein-like | 3e-10 | At3g13340 | WD-40 repeat family protein | O.I. | H.G. | S.X. | |
| 0.33 | 38.8 | 0.96 | Os02g0826400 | C98392 | - | Conserved hypothetical protein | 7e-2 | At4g24026 | unknown protein | O.I. | H.G. | S.X. | |
| 0.31 | 34.5 | 0.96 | Os01g0589500 | AB110176.1 | - | - | 1e-1 | At3g12130 | KH domain-containing protein / zinc finger (CCCH type) family protein | O.I. | H.G. | S.X. | |
| 0.30 | 32.7 | 0.95 | Os10g0564800 | CA766884 | - | Calcium-binding EF-hand domain containing protein | 7e-6 | At5g47100 | CBL9 | O.I. | H.G. | S.X. | |
| 0.29 | 31.1 | 0.96 | Os03g0852200 | AK068059.1 | - | Der1-like domain containing protein | 4e-30 | At4g21810 | DER2.1 (DERLIN-2.1) | O.I. | H.G. | S.X. | |
| 0.29 | 31.1 | 0.94 | Os07g0604500 | AK064312.1 | - | Mitochondrial inner membrane translocase TM17-2(Fragment) | 4e-2 | At4g21740 | unknown protein | O.I. | H.G. | S.X. | |
| 0.28 | 31.1 | 0.95 | Os12g0632000 | BI797959 | - | Glycine-rich RNA-binding protein GRP1A | 8e-1 | At5g40970 | unknown protein | O.I. | H.G. | S.X. | |
| 0.27 | 27.5 | 0.97 | Os04g0464500 | AK069067.1 | - | UBX domain containing protein | 7e-4 | At4g22150 | PUX3 | O.I. | H.G. | S.X. | |
| 0.25 | 24.1 | 0.97 | Os06g0264300 | AK061556.1 | - | UV excision repair protein Rad23 family protein | 1e-12 | At3g02540 | RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) | O.I. | H.G. | S.X. | |
| 0.25 | 24.1 | 0.97 | Os06g0106100 | AK112060.1 | - | Cwf15/Cwc15 cell cycle control protein familyprotein | 6e-10 | At3g13200 | EMB2769 (EMBRYO DEFECTIVE 2769) | O.I. | H.G. | S.X. | |
| 0.23 | 21.2 | 0.96 | Os02g0782700 | AF193803.1 | - | Transcription factor EREBP1 | 2e-14 | At3g14230 | RAP2.2 | O.I. | H.G. | S.X. | |
| 0.23 | 21.2 | 0.97 | Os01g0147200 | AK121921.1 | - | - | 3e-7 | At1g32130 | - | O.I. | H.G. | S.X. | |
| 0.23 | 21.2 | 0.96 | Os07g0607300 | AK102747.1 | - | Agenet domain containing protein | 2e-2 | At3g44590 | 60S acidic ribosomal protein P2 (RPP2D) | O.I. | H.G. | S.X. | |
| 0.19 | 15.1 | 0.96 | Os08g0305300 | AK105754.1 | - | TPR-like domain containing protein | 5e-4 | At5g19400 | SMG7 | O.I. | H.G. | S.X. | |
| 0.19 | 15.1 | 0.96 | Os08g0548200 | AK102617.1 | - | ER lumen protein retaining receptor-like protein | 2e-22 | At1g19970 | ER lumen protein retaining receptor family protein | O.I. | H.G. | S.X. | |
| 0.17 | 12.6 | 0.95 | Os01g0507500 | AK102891.1 | - | Conserved hypothetical protein | 2e-1 | At1g71080 | unknown protein | O.I. | H.G. | S.X. | |
| 0.17 | 12.6 | 0.96 | Os03g0180000 | CF326916 | - | Sodium/calcium exchanger membrane region domaincontaining protein | 1e-9 | At1g54115 | CCX4 (CATION CALCIUM EXCHANGER 4) | O.I. | H.G. | S.X. | |
| 0.17 | 12.6 | 0.96 | Os03g0408500 | CF314141 | - | Transcription factor TAFII-31 domain containingprotein | 2e+0 | At4g33640 | unknown protein | O.I. | H.G. | S.X. | |
| 0.08 | 4.2 | 0.95 | Os08g0480800 | AK101599.1 | - | TaWIN2 | 3e-27 | At1g78300 | GRF2 (GENERAL REGULATORY FACTOR 2) | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 11.0 | 98.2 | GSM377076 | Genomic DNA - 45 day old leaf sample - mutant g6485 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 10.5 | 98.1 | GSM377071 | Genomic DNA - 45 day old leaf sample - mutant d256 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 10.4 | 98.1 | GSM377075 | Genomic DNA - 45 day old leaf sample - mutant g650 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 10.4 | 98.1 | GSM377084 | Genomic DNA - 45 day old leaf sample - mutant f1856 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 10.4 | 98.1 | GSM377077 | Genomic DNA - 45 day old leaf sample - mutant g6489 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 10.3 | 98.1 | GSM377070 | Genomic DNA - 45 day old leaf sample - mutant d1 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 10.2 | 98.0 | GSM377080 | Genomic DNA - 45 day old leaf sample - mutant g6728 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.8 | 98.0 | GSM377082 | Genomic DNA - 45 day old leaf sample - mutant g9799 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.7 | 98.0 | GSM377074 | Genomic DNA - 45 day old leaf sample - mutant g282 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.6 | 97.9 | GSM377081 | Genomic DNA - 45 day old leaf sample - mutant g7534 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| SF | Genes | GO ID | Process Name | Link to AmiGO |
|---|---|---|---|---|
| 0.050 | 1 | GO:0006289 | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). |  |
| 0.044 | 2 | GO:0015031 | The directed movement of proteins into, out of, within or between cells. | |
| 0.025 | 1 | GO:0006464 | The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). | |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
| Zea_mays |
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