Co-expression analysis

Gene ID Os04g0554500
Gene name
Homology with ArabidopsisSimilar to At2g25820: transcription factor (HF=2e+0)
Module size 10 genes
NF 0.59
%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8295.00.86Os04g0554500AY466109.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein2e+0At2g25820transcription factorO.I.H.G.S.X.
0.7491.40.93Os02g0653200AK062889.1-Cupredoxin domain containing protein7e-3At1g72230plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.6987.90.89Os01g0838200AU075817-Conserved hypothetical protein1e+0At4g28025unknown proteinO.I.H.G.S.X.
0.6787.20.87Os05g0499300D14997.1-Peroxidase precursor (EC 1.11.1.7)7e-1At3g21770peroxidase 30 (PER30) (P30) (PRXR9)O.I.H.G.S.X.
0.5777.00.89Os05g0517900CA761897-Appr>p cyclic nucleotide phosphodiesterase domaincontaining protein1e-1At2g20515unknown proteinO.I.H.G.S.X.
0.5777.00.91Os07g0175600AK073569.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein3e-2At3g22600protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5573.70.91Os02g0662000AK109149.1-RCc3 protein1e-1At2g25820transcription factorO.I.H.G.S.X.
0.4660.90.93Os05g0501300AK059889.1-1,4-benzoquinone reductase5e-7At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)O.I.H.G.S.X.
0.4458.10.90Os02g0256200AB110701.1-Conserved hypothetical protein1e-1At5g67060HEC1 (HECATE 1)O.I.H.G.S.X.
0.3541.70.90Os03g0245500AK064707.1-Curculin-like (mannose-binding) lectin domaincontaining protein1e+1At5g53560CB5-E (CYTOCHROME B5 ISOFORM E)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.998.0GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.597.9GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.197.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.997.6GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0952GO:0006869The directed movement of lipids into, out of, within or between cells. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.Link to AmiGO
0.0871GO:0005992The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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