CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0554000

Gene name
Homology with Arabidopsis Similar to At4g22590: trehalose-6-phosphate phosphatase, putative (HF=3e-5)

Module size 8 genes

NF 0.33

%ile 36.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.97 Os04g0554000 9632.m04509 - - 3e-5 At4g22590 trehalose-6-phosphate phosphatase, putative O.I. H.G. S.X.
0.50 68.0 0.98 Os09g0465300 AK121928.1 - - 9e+0 Atcg00130 - O.I. H.G. S.X.
0.41 52.4 0.98 Os12g0480400 9640.m02852 - - 4e-1 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein O.I. H.G. S.X.
0.37 45.0 0.98 Os09g0569900 AK073081.1 - Hypothetical protein 1e-1 At5g39390 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.30 32.7 0.98 Os05g0163600 AK064541.1 - Conserved hypothetical protein 3e+0 At5g64650 ribosomal protein L17 family protein O.I. H.G. S.X.
0.28 31.1 0.98 Os04g0475000 AK068631.1 - Conserved hypothetical protein 2e-3 At5g17280 unknown protein O.I. H.G. S.X.
0.25 24.1 0.98 Os07g0595000 9635.m04038 - - 3e+0 At5g53895 unknown protein O.I. H.G. S.X.
0.16 11.3 0.97 Os04g0211900 AK119924.1 - Conserved hypothetical protein 2e-1 At5g01445 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.0 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.4 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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