CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0551800

Gene name
Homology with Arabidopsis Similar to At3g20050: ATTCP-1 (HF=4e-40)

Module size 6 genes

NF 0.72

%ile 94.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os04g0551800 AK121568.1 - T-complex protein 1, alpha subunit (TCP-1-alpha)(CCT-alpha) 4e-40 At3g20050 ATTCP-1 O.I. H.G. S.X.
0.73 91.1 0.97 Os03g0619400 CB653322 - Chaperonin Cpn60 family protein 1e-57 At5g20890 chaperonin, putative O.I. H.G. S.X.
0.67 87.2 0.97 Os06g0687700 AK109357.2 - T-complex protein 1, eta subunit (TCP-1-eta)(CCT-eta) (HIV-1 Nef interacting protein) 2e-44 At3g11830 chaperonin, putative O.I. H.G. S.X.
0.67 87.2 0.98 Os05g0147400 AK062146.1 - T-complex protein 1, zeta subunit (TCP-1-zeta)(CCT-zeta) (CCT-zeta- 1) 6e-67 At5g16070 chaperonin, putative O.I. H.G. S.X.
0.63 82.7 0.97 Os06g0538000 AK069949.1 - Chaperonin Cpn60/TCP-1 family protein 5e-83 At5g26360 chaperonin, putative O.I. H.G. S.X.
0.46 60.9 0.98 Os02g0332200 AK067672.1 - T-complex protein 1 delta subunit 2e-29 At3g18190 chaperonin, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.6 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.073 3 GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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