CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0543000

Gene name
Homology with Arabidopsis Similar to At2g39110: protein kinase, putative (HF=1e-3)

Module size 18 genes

NF 0.18

%ile 16.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 91.4 0.86 Os04g0543000 AK064119.1 - Protein kinase 1e-3 At2g39110 protein kinase, putative O.I. H.G. S.X.
0.33 38.8 0.88 Os04g0537800 AK103654.1 - Protein of unknown function DUF26 domaincontaining protein 4e-2 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.
0.26 25.6 0.92 Os03g0127900 AK062977.1 - Conserved hypothetical protein 4e-8 At5g51710 KEA5 O.I. H.G. S.X.
0.26 25.6 0.91 Os11g0546300 AK121962.1 - Patatin family protein 3e-9 At1g33270 patatin-related O.I. H.G. S.X.
0.24 22.4 0.93 Os08g0128200 AK120428.1 - Conserved hypothetical protein 4e+0 At3g49620 DIN11 (DARK INDUCIBLE 11) O.I. H.G. S.X.
0.24 22.4 0.93 Os05g0150800 AK103505.1 - C-1-tetrahydrofolate synthase, cytoplasmic (C1-THFsynthase) [Includes: Methylenetetrahydrofolatedehydrogenase (EC 1.5.1.5) 3e-18 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative O.I. H.G. S.X.
0.24 22.4 0.90 Os04g0691800 CB651732 - C2 domain containing protein 2e-2 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) O.I. H.G. S.X.
0.18 13.7 0.93 Os02g0741300 AK120667.1 - Glycoside hydrolase, family 47 protein 1e-33 At1g27520 glycoside hydrolase family 47 protein O.I. H.G. S.X.
0.18 13.7 0.90 Os08g0532400 AK101608.1 - Nodulin-like protein 5e-12 At3g01930 nodulin family protein O.I. H.G. S.X.
0.17 12.6 0.93 Os03g0684000 AK105025.2 - Zn-finger, GATA type domain containing protein 1e-2 At3g21175 ZML1 (ZIM-LIKE 1) O.I. H.G. S.X.
0.14 9.3 0.93 Os01g0390400 AK106834.1 - Nucleic acid-binding OB-fold domain containingprotein 4e-16 At4g27340 Met-10+ like family protein O.I. H.G. S.X.
0.14 9.3 0.95 Os04g0278900 AK108886.1 - Dihydrouridine synthase, DuS family protein 2e-3 At3g63510 FAD binding / catalytic/ tRNA dihydrouridine synthase O.I. H.G. S.X.
0.13 8.2 0.90 Os11g0160500 AY224425.1 - BZIP-like protein 8e-11 At1g43700 VIP1 (VIRE2-INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.12 7.2 0.91 Os04g0528800 AK103671.1 - Ferredoxin-thioredoxin reductase, variable chain(FTR-V) (Ferredoxin- thioredoxin reductase subunit A)(FTR-A) 4e-1 At2g05440 glycine-rich protein O.I. H.G. S.X.
0.11 6.5 0.92 Os09g0421500 AK070023.1 - Conserved hypothetical protein 3e-3 At2g23320 WRKY15 O.I. H.G. S.X.
0.09 4.9 0.89 Os01g0973600 AK071351.1 - Uncharacterized plant-specific protein DUF506domain containing protein 2e-1 At2g39650 unknown protein O.I. H.G. S.X.
0.08 4.2 0.93 Os02g0150800 BX901712 - Cyclin-like F-box domain containing protein 8e-1 At1g32470 glycine cleavage system H protein, mitochondrial, putative O.I. H.G. S.X.
0.06 3.0 0.91 Os03g0800500 AK070229.1 - - 2e-1 At1g78410 VQ motif-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
37.5 99.8 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
12.9 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM262020 Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1 GSE10373 Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
9.9 98.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.083 1 GO:0009396 The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.
0.080 1 GO:0006487 The posttranslational glycosylation of protein via the N4 atom of peptidyl-asparagine or the N1' atom peptidyl-tryptophan.
0.025 1 GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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