Co-expression analysis

Gene ID Os04g0542800
Gene name
Homology with ArabidopsisSimilar to At5g24380: YSL2 (YELLOW STRIPE LIKE 2) (HF=6e-9)
Module size 10 genes
NF 0.11
%ile 8.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.84Os04g0542800AK070304.1-Oligopeptide transporter OPT superfamily protein6e-9At5g24380YSL2 (YELLOW STRIPE LIKE 2)O.I.H.G.S.X.
0.5777.00.86Os03g0634400AK111510.1--5e-2At4g14580CIPK4 (CBL-interacting protein kinase 4)O.I.H.G.S.X.
0.3134.50.94Os01g0559600AB025310.1-Vacuolar processing enzyme, alpha-isozymeprecursor (EC 3.4.22.-) (Alpha-VPE)3e-16At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)O.I.H.G.S.X.
0.2727.50.92Os04g0390500AK100148.1-Iron-phytosiderophore transporter protein yellowstripe 11e-21At3g27020YSL6 (YELLOW STRIPE LIKE 6)O.I.H.G.S.X.
0.1915.10.92Os08g0292900AK111645.1-Homeodomain transcription factor KNAT73e-9At5g11060KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)O.I.H.G.S.X.
0.1712.60.88Os03g0845000AK105971.1-Pirin-like protein7e-4At1g50590pirin, putativeO.I.H.G.S.X.
0.1712.60.94Os04g0650000AK121500.1-Oryzain alpha chain precursor (EC 3.4.22.-)2e-26At1g47128RD21 (responsive to dehydration 21)O.I.H.G.S.X.
0.105.70.87Os08g0434300AK058477.1-Malate dehydrogenase precursor (EC 1.1.1.37)3e-46At3g47520MDH (MALATE DEHYDROGENASE)O.I.H.G.S.X.
0.042.00.88Os02g0752800AK105877.1-Dehydration responsive element binding protein 2B(DREB2B protein)7e-5At2g22200AP2 domain-containing transcription factorO.I.H.G.S.X.
0.042.00.88Os03g0139400AK070427.1-Hypothetical protein2e-1At2g15680calmodulin-related protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.796.4GSM359908IR29 root, control, biological replicate 1GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stressLink to GEO
4.496.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
3.995.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.795.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.695.5GSM207567Mudanjiang8 wild type control rep3GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO
3.495.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.395.1GSM302915emb6D_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
3.294.9GSM359915IR63731 root, control, biological replicate 3GSE14403Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stressLink to GEO
3.194.8GSM302914emb6D_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
3.194.8GSM207565Mudanjiang8 wild type control rep1GSE8380Rice Gene Network Inferred from Expression Profiling of Plants Overexpressing OsWRKY13Link to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0631GO:0006099A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.Link to AmiGO
0.0281GO:0007165The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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