Co-expression analysis

Gene ID Os04g0542200
Gene name
Homology with ArabidopsisSimilar to At5g24380: YSL2 (YELLOW STRIPE LIKE 2) (HF=6e-9)
Module size 6 genes
NF 0.56
%ile 75.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.87Os04g0542200AK120923.1-Oligopeptide transporter OPT superfamily protein6e-9At5g24380YSL2 (YELLOW STRIPE LIKE 2)O.I.H.G.S.X.
0.6787.20.86Os03g0237100AK073738.1-Aldo/keto reductase family protein2e-1At1g11690unknown proteinO.I.H.G.S.X.
0.6787.20.86Os03g0194600AK062839.1-Protein of unknown function DUF568 domaincontaining protein6e+0At5g53030unknown proteinO.I.H.G.S.X.
0.4051.10.89Os02g0714600AK103643.1-Phosphoribosyl pyrophosphate synthase isozyme 4(EC 2.7.6.1)1e-11At2g42910ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4)O.I.H.G.S.X.
0.3846.90.87Os02g0650300AK063464.1-Oligopeptide transporter OPT superfamily protein4e-9At4g24120YSL1 (YELLOW STRIPE LIKE 1)O.I.H.G.S.X.
0.2727.50.87Os12g0126200AK099983.1--3e+0At3g24110calcium-binding EF hand family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.198.0GSM302918leaf_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
8.397.7GSM302919leaf_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
6.597.2GSM116398Seedling_Control_rep2GSE5167Rice seedling hormone treatmentLink to GEO
6.497.2GSM281585Rice Zhonghua11, biological rep3GSE11175Comparison of transcriptome profile between wild-type and dst mutant plantsLink to GEO
6.197.1GSM116402Seedling_BAP treated_rep2GSE5167Rice seedling hormone treatmentLink to GEO
5.796.9GSM116195Seedling_Control_rep1GSE5167Rice seedling hormone treatmentLink to GEO
5.696.9GSM281584Rice Zhonghua11, biological rep2GSE11175Comparison of transcriptome profile between wild-type and dst mutant plantsLink to GEO
5.496.8GSM116400Seedling_IAA treated_rep2GSE5167Rice seedling hormone treatmentLink to GEO
4.296.0GSM116399Seedling_IAA treated_rep1GSE5167Rice seedling hormone treatmentLink to GEO
4.196.0GSM116401Seedling_BAP treated_rep1GSE5167Rice seedling hormone treatmentLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0009165The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).Link to AmiGO
0.2001GO:0018346The covalent attachment of a prenyl moiety to a protein amino acid.Link to AmiGO
0.1251GO:0006584The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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