CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0534200

Gene name
Homology with Arabidopsis Similar to At5g41180: leucine-rich repeat protein kinase, putative (HF=8e-4)

Module size 6 genes

NF 0.66

%ile 89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.92 Os04g0534200 AK109583.1 - Receptor kinase-like protein 8e-4 At5g41180 leucine-rich repeat protein kinase, putative O.I. H.G. S.X.
0.91 98.9 0.91 Os08g0130000 9636.m00276 - Conserved hypothetical protein 1e-11 At2g04305 magnesium transporter CorA-like protein-related O.I. H.G. S.X.
0.83 95.8 0.90 Os05g0143800 AK106538.1 - GH3 auxin-responsive promoter family protein 1e+0 At2g46505 SDH4 O.I. H.G. S.X.
0.67 87.2 0.91 Os05g0148900 AK120912.1 - Glutathione-S-transferase 19E50 1e+0 At1g03860 ATPHB2 (PROHIBITIN 2) O.I. H.G. S.X.
0.67 87.2 0.91 Os02g0448000 9630.m02338 - Protein of unknown function DUF296 domaincontaining protein 8e-6 At4g22810 DNA-binding protein-related O.I. H.G. S.X.
0.32 36.3 0.91 Os12g0640700 AK108649.1 - N/apple PAN domain containing protein 8e-1 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.8 99.2 GSM195224 Suspension cell GSE7951 Genome-wide gene expression profiling of rice stigma
15.8 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1617238_at, orthologous to the query gene, Os04g0534200

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 1617238_at At5g41180 hypothetical protein LOC100258246 - 3e-27 At1g63430 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.71 89.5 1611391_at At5g41180 hypothetical protein LOC100256320 - 1e-15 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.
0.67 87.9 1615577_at At5g41180 hypothetical protein LOC100256811 - 4e-92 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) O.I. H.G. S.X.
0.56 79.4 1622512_at At5g41180 hypothetical protein LOC100260682 - 4e-27 At4g38430 ROPGEF1 O.I. H.G. S.X.
0.47 67.7 1621139_at At5g41180 hypothetical protein LOC100262947 - 3e-9 At5g08390 - O.I. H.G. S.X.
0.17 18.2 1611111_at At5g41180 hypothetical protein LOC100256502 - 3e-33 At1g63500 ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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