Co-expression analysis

Gene ID Os04g0530300
Gene name
Homology with ArabidopsisSimilar to At5g57370: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.43
%ile 54.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.97Os04g0530300AK062618.1-Conserved hypothetical protein1e+0At5g57370unknown proteinO.I.H.G.S.X.
0.6787.20.97Os03g0718200AK063808.1-SWIM Zn-finger domain containing protein4e-1At3g57310protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5371.30.96Os10g0564100AK069258.1-SOH1 family protein4e-17At5g19910SOH1 family proteinO.I.H.G.S.X.
0.5068.00.97Os11g0533600CB643005-Hypothetical protein5e+0At4g35570HMGB5 (HIGH MOBILITY GROUP B 5)O.I.H.G.S.X.
0.4660.90.96Os07g0644300AK066726.1-XPA-binding protein 2 (HCNP protein) (PP3898)2e-18At5g28740transcription-coupled DNA repair protein-relatedO.I.H.G.S.X.
0.1915.10.96Os12g0109900AB036988.1-Double-stranded RNA binding domain containingprotein6e-2At2g28380DRB2 (DSRNA-BINDING PROTEIN 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.198.2GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.097.6GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.697.5GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.497.5GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.097.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0151GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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