CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0528300

Gene name
Homology with Arabidopsis Similar to At1g17840: WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) (HF=2e-12)

Module size 6 genes

NF 0.59

%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.89 Os04g0528300 AK064945.1 - ABC transporter related domain containing protein 2e-12 At1g17840 WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11) O.I. H.G. S.X.
0.67 87.2 0.88 Os09g0426800 AK120227.1 - Gl1 protein 3e-1 At4g12950 - O.I. H.G. S.X.
0.50 68.0 0.91 Os05g0222200 AK068591.1 - ABC transporter 4e-13 At3g21090 ABC transporter family protein O.I. H.G. S.X.
0.46 60.9 0.88 Os07g0510400 AK119544.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) O.I. H.G. S.X.
0.44 58.1 0.89 Os05g0489200 AK069135.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 2e+0 At2g27300 NTL8 (NTM1-LIKE 8) O.I. H.G. S.X.
0.40 51.1 0.89 Os12g0411700 BI806808 - ABC transporter related domain containing protein 9e-1 At1g60660 CB5LP (CYTOCHROME B5-LIKE PROTEIN) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
58.5 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.4 99.5 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.1 99.3 GSM429984 Rice wild-type panicle rep2 GSE17194 Genome-wide gene expression profiling of rice Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle
17.4 98.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.8 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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