Co-expression analysis

Gene ID Os04g0525700
Gene name
Homology with ArabidopsisSimilar to At5g23210: SCPL34 (HF=2e-1)
Module size 6 genes
NF 0.49
%ile 63.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7793.10.92Os04g0525700AK105830.1-Peptidase S10, serine carboxypeptidase familyprotein2e-1At5g23210SCPL34O.I.H.G.S.X.
0.6079.70.93Os02g0756100AK060615.1-Conserved hypothetical protein2e+0At3g12140emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.5068.00.93Os03g0320800AK103265.1-Protein kinase domain containing protein3e-2At4g3467040S ribosomal protein S3A (RPS3aB)O.I.H.G.S.X.
0.4660.90.92Os06g0217900AK103765.1-Cyclin, C-terminal domain containing protein8e-1At4g14520DNA-directed RNA polymerase II-relatedO.I.H.G.S.X.
0.4660.90.94Os01g0631700AK065494.1-Ser Thr specific protein kinase-like protein9e-23At2g42960protein kinase family proteinO.I.H.G.S.X.
0.1712.60.93Os02g0702600AK102962.1-Protein of unknown function DUF315 domaincontaining protein3e-1At4g30480tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.498.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.898.6GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
13.498.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.098.4GSM100446Rice Bala 1ppm Arsenate Rep2GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
12.698.4GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.698.2GSM149410Rice Azucena 1ppm Arsenate Rep3GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
10.198.0GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.898.0GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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