CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0521100

Gene name
Homology with Arabidopsis Similar to At2g37170: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) (HF=1e-42)

Module size 20 genes

NF 0.52

%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.78 93.4 0.77 Os04g0521100 9632.m04226 - Plasma membrane intrinsic protein (Aquaporin) 1e-42 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) O.I. H.G. S.X.
0.77 93.1 0.87 Os12g0567300 AK107214.1 - Snapdragon myb protein 305 homolog 5e-14 At3g46130 MYB111 (MYB DOMAIN PROTEIN 111) O.I. H.G. S.X.
0.70 88.4 0.87 Os11g0700500 AK111626.1 - Myb, DNA-binding domain containing protein 1e-8 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) O.I. H.G. S.X.
0.70 88.4 0.86 Os01g0297200 AK109883.1 - AAA ATPase, central region domain containingprotein 6e-5 At4g25835 AAA-type ATPase family protein O.I. H.G. S.X.
0.62 81.5 0.85 Os11g0232100 AK105669.1 - Protein kinase domain containing protein 7e-3 At1g72180 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.62 81.5 0.87 Os05g0114700 AK111634.1 - Myb, DNA-binding domain containing protein 7e-5 At4g38620 MYB4 O.I. H.G. S.X.
0.61 81.2 0.86 Os11g0186900 AK105491.1 - 1-aminocyclopropane-1-carboxylate oxidase 2e-13 At1g05010 EFE (ETHYLENE-FORMING ENZYME) O.I. H.G. S.X.
0.60 79.7 0.81 Os06g0500700 9634.m02934 - Cytochrome P450 family protein 1e-2 At3g26300 CYP71B34 O.I. H.G. S.X.
0.57 77.0 0.88 Os08g0176900 AK107028.1 - - 1e+0 At5g17080 cathepsin-related O.I. H.G. S.X.
0.55 73.7 0.83 Os04g0189012 9632.m00980 - - 2e+0 At5g13910 LEP (LEAFY PETIOLE) O.I. H.G. S.X.
0.55 73.7 0.85 Os03g0149300 BU673570 - Protein of unknown function DUF6 domain containingprotein 2e+0 At4g10595 LCR2 (Low-molecular-weight cysteine-rich 2) O.I. H.G. S.X.
0.54 71.9 0.84 Os04g0188500 9632.m00978 - Hypothetical protein 6e-1 At2g18870 VEL3 (VERNALIZATION5/VIN3-LIKE) O.I. H.G. S.X.
0.52 69.6 0.88 Os11g0152700 AK102690.1 - Transcription factor HBP-1b(C38) (Fragment) 3e-1 At1g77920 bZIP family transcription factor O.I. H.G. S.X.
0.44 58.1 0.88 Os02g0809800 AK063181.1 - - 5e-1 At2g34140 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.42 53.9 0.85 Os10g0521500 AK105796.1 - Esterase/lipase/thioesterase domain containingprotein 3e+0 At5g02750 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.39 48.3 0.82 Os02g0588700 AK100801.1 - Conserved hypothetical protein 2e+0 At3g60110 DNA binding O.I. H.G. S.X.
0.36 44.0 0.84 Os12g0490000 CA762266 - Mitochodrial transcription terminationfactor-related family protein 5e+0 At4g08170 inositol 1,3,4-trisphosphate 5/6-kinase family protein O.I. H.G. S.X.
0.34 40.0 0.88 Os12g0454800 AY572461.1 - Histidine kinase 7e-3 At5g10530 lectin protein kinase, putative O.I. H.G. S.X.
0.34 40.0 0.90 Os01g0291500 AK070443.1 - Transferase family protein 9e-4 At3g62160 transferase family protein O.I. H.G. S.X.
0.23 21.2 0.88 Os10g0390600 AK107029.1 - 1-aminocyclopropane-1-carboxylate synthase familyprotein 4e-7 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.78	93.4	0.77	Os04g0521100	9632.m04226	-	Plasma membrane intrinsic protein (Aquaporin)	1e-42	At2g37170	PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2)	O.I.	H.G.	S.X.
0.77	93.1	0.87	Os12g0567300	AK107214.1	-	Snapdragon myb protein 305 homolog	5e-14	At3g46130	MYB111 (MYB DOMAIN PROTEIN 111)	O.I.	H.G.	S.X.
0.70	88.4	0.87	Os11g0700500	AK111626.1	-	Myb, DNA-binding domain containing protein	1e-8	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	O.I.	H.G.	S.X.
0.70	88.4	0.86	Os01g0297200	AK109883.1	-	AAA ATPase, central region domain containingprotein	6e-5	At4g25835	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.62	81.5	0.85	Os11g0232100	AK105669.1	-	Protein kinase domain containing protein	7e-3	At1g72180	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.62	81.5	0.87	Os05g0114700	AK111634.1	-	Myb, DNA-binding domain containing protein	7e-5	At4g38620	MYB4	O.I.	H.G.	S.X.
0.61	81.2	0.86	Os11g0186900	AK105491.1	-	1-aminocyclopropane-1-carboxylate oxidase	2e-13	At1g05010	EFE (ETHYLENE-FORMING ENZYME)	O.I.	H.G.	S.X.
0.60	79.7	0.81	Os06g0500700	9634.m02934	-	Cytochrome P450 family protein	1e-2	At3g26300	CYP71B34	O.I.	H.G.	S.X.
0.57	77.0	0.88	Os08g0176900	AK107028.1	-	-	1e+0	At5g17080	cathepsin-related	O.I.	H.G.	S.X.
0.55	73.7	0.83	Os04g0189012	9632.m00980	-	-	2e+0	At5g13910	LEP (LEAFY PETIOLE)	O.I.	H.G.	S.X.
0.55	73.7	0.85	Os03g0149300	BU673570	-	Protein of unknown function DUF6 domain containingprotein	2e+0	At4g10595	LCR2 (Low-molecular-weight cysteine-rich 2)	O.I.	H.G.	S.X.
0.54	71.9	0.84	Os04g0188500	9632.m00978	-	Hypothetical protein	6e-1	At2g18870	VEL3 (VERNALIZATION5/VIN3-LIKE)	O.I.	H.G.	S.X.
0.52	69.6	0.88	Os11g0152700	AK102690.1	-	Transcription factor HBP-1b(C38) (Fragment)	3e-1	At1g77920	bZIP family transcription factor	O.I.	H.G.	S.X.
0.44	58.1	0.88	Os02g0809800	AK063181.1	-	-	5e-1	At2g34140	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.
0.42	53.9	0.85	Os10g0521500	AK105796.1	-	Esterase/lipase/thioesterase domain containingprotein	3e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.39	48.3	0.82	Os02g0588700	AK100801.1	-	Conserved hypothetical protein	2e+0	At3g60110	DNA binding	O.I.	H.G.	S.X.
0.36	44.0	0.84	Os12g0490000	CA762266	-	Mitochodrial transcription terminationfactor-related family protein	5e+0	At4g08170	inositol 1,3,4-trisphosphate 5/6-kinase family protein	O.I.	H.G.	S.X.
0.34	40.0	0.88	Os12g0454800	AY572461.1	-	Histidine kinase	7e-3	At5g10530	lectin protein kinase, putative	O.I.	H.G.	S.X.
0.34	40.0	0.90	Os01g0291500	AK070443.1	-	Transferase family protein	9e-4	At3g62160	transferase family protein	O.I.	H.G.	S.X.
0.23	21.2	0.88	Os10g0390600	AK107029.1	-	1-aminocyclopropane-1-carboxylate synthase familyprotein	4e-7	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.5 99.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.8 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
29.5	99.7	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.8	99.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.5	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0	98.2	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8	98.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4	98.1	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7	98.0	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os04g0521100
Gene name
Homology with Arabidopsis	Similar to At2g37170: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) (HF=1e-42)
Module size	20 genes
NF	0.52
%ile	70.1

Co-expression analysis

Gene ID Os04g0521100 Gene name Homology with ArabidopsisSimilar to At2g37170: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) (HF=1e-42) Module size 20 genes NF 0.52 %ile 70.1

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0521100

Gene name
Homology with Arabidopsis Similar to At2g37170: PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) (HF=1e-42)

Module size 20 genes

NF 0.52

%ile 70.1

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays