CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0518400

Gene name
Homology with Arabidopsis Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=4e-22)

Module size 6 genes

NF 0.72

%ile 94.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.89 Os04g0518400 AK067801.1 - Phenylalanine ammonia-lyase 2 (EC 4.3.1.5) 4e-22 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) O.I. H.G. S.X.
0.67 87.2 0.89 Os02g0697400 AK105636.1 - 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)(4-coumaroyl-CoA synthase 2) 8e-5 At1g65060 4CL3 O.I. H.G. S.X.
0.67 87.2 0.90 Os10g0320100 AK064736.1 - Flavonoid 3'-monooxygenase (EC 1.14.13.21)(Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2) 6e-2 At5g07990 TT7 (TRANSPARENT TESTA 7) O.I. H.G. S.X.
0.67 87.2 0.93 Os06g0102100 AK099468.1 - Cytochrome P450 family protein 1e+0 At5g46020 unknown protein O.I. H.G. S.X.
0.67 87.2 0.93 Os07g0510500 AK068586.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 4e-3 At3g21800 UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8) O.I. H.G. S.X.
0.50 68.0 0.91 Os12g0115700 AK099443.1 - Chalcone-flavanone isomerase family protein 3e+0 At4g04745 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.2 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.4 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0006559 The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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