CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0517000

Gene name
Homology with Arabidopsis Similar to At1g11700: unknown protein (HF=3e-2)

Module size 6 genes

NF 0.56

%ile 75.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 60.9 0.94 Os04g0517000 AK101663.1 - Conserved hypothetical protein 3e-2 At1g11700 unknown protein O.I. H.G. S.X.
0.71 89.6 0.93 Os01g0326000 AK061371.1 - Peroxidase 1 2e-1 At1g44970 peroxidase, putative O.I. H.G. S.X.
0.55 73.7 0.94 Os01g0756600 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - O.I. H.G. S.X.
0.55 73.7 0.95 Os05g0406800 AK062566.1 - Leucine-rich repeat, plant specific containingprotein 2e-2 At3g53235 unknown protein O.I. H.G. S.X.
0.50 68.0 0.96 Os01g0957100 AK122121.1 - Protein kinase domain containing protein 2e+0 At3g45230 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.46 60.9 0.93 Os01g0531400 AK102373.1 - Protein of unknown function DUF642 family protein 3e-16 At2g34510 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.8 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.9 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.5 98.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.022 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

A co-expression module including the maize gene, Zm.14463.1.A1_at, orthologous to the query gene, Os04g0517000

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 Zm.14463.1.A1_at At1g11700 hypothetical protein LOC100194081 - 2e+0 At4g22380 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein O.I. H.G. S.X.
0.73 89.9 Zm.6567.1.A1_at At1g11700 - - 2e+0 At5g41030 TCP family transcription factor, putative O.I. H.G. S.X.
0.61 79.5 Zm.5850.1.A1_at At1g11700 - - 2e-7 At4g04910 NSF (N-ethylmaleimide sensitive factor) O.I. H.G. S.X.
0.47 59.9 Zm.5872.1.A1_at At1g11700 - - 8e-14 At1g73720 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.46 58.4 Zm.3531.1.A1_at At1g11700 p5cs - 5e-12 At3g55610 P5CS2 (DELTA 1-PYRROLINE-5-CARBOXYLATE SYNTHASE 2) O.I. H.G. S.X.
0.44 55.7 Zm.7519.1.A1_at At1g11700 - - 1e+0 At1g70895 CLE17 (CLAVATA3/ESR-RELATED 17) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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