Co-expression analysis

Gene ID Os04g0517000
Gene name
Homology with ArabidopsisSimilar to At1g11700: unknown protein (HF=3e-2)
Module size 6 genes
NF 0.56
%ile 75.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4660.90.94Os04g0517000AK101663.1-Conserved hypothetical protein3e-2At1g11700unknown proteinO.I.H.G.S.X.
0.7189.60.93Os01g0326000AK061371.1-Peroxidase 12e-1At1g44970peroxidase, putativeO.I.H.G.S.X.
0.5573.70.94Os01g0756600AK102373.1-Protein of unknown function DUF642 family protein3e-16At2g34510-O.I.H.G.S.X.
0.5573.70.95Os05g0406800AK062566.1-Leucine-rich repeat, plant specific containingprotein2e-2At3g53235unknown proteinO.I.H.G.S.X.
0.5068.00.96Os01g0957100AK122121.1-Protein kinase domain containing protein2e+0At3g45230hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.4660.90.93Os01g0531400AK102373.1-Protein of unknown function DUF642 family protein3e-16At2g34510-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.899.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
19.999.1GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
17.598.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.498.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.198.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.498.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.798.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0221GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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