Co-expression analysis

Gene ID Os04g0509600
Gene name
Homology with ArabidopsisSimilar to At1g64780: ATAMT1 (HF=1e-12)
Module size 9 genes
NF 0.34
%ile 38.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5877.00.84Os04g0509600AF001505.1--1e-12At1g64780ATAMT1O.I.H.G.S.X.
0.4458.10.87Os04g0448300AK109494.1-Peptidase A1, pepsin family protein1e-2At2g42980aspartyl protease family proteinO.I.H.G.S.X.
0.3846.90.90Os02g0273700AK102828.1-VHS domain containing protein2e-8At4g32760protein transporterO.I.H.G.S.X.
0.3541.70.88Os01g0201200AK069537.1-Protein kinase8e-2At1g52827unknown proteinO.I.H.G.S.X.
0.3134.50.88Os01g0815400AK121388.1-Conserved hypothetical protein1e-1At3g42155catalytic/ hydrolase, hydrolyzing O-glycosyl compoundsO.I.H.G.S.X.
0.2931.10.87Os06g0268700AK120783.1-Peptidase A1, pepsin family protein2e-2At4g33490aspartic-type endopeptidaseO.I.H.G.S.X.
0.2727.50.89Os02g0629200AK120386.1-Plasma membrane integral protein ZmPIP2-31e+0At2g37180RD28 (RESPONSIVE TO DESICCATION 28)O.I.H.G.S.X.
0.2625.60.88Os05g0105000AK121285.1-Methionine S-methyltransferase (EC 2.1.1.12)(AdoMet:Met S- methyltransferase) (Hv-MMT1)1e-29At5g49810MMTO.I.H.G.S.X.
0.2422.40.87Os05g0179300AK100028.1-Transferase family protein4e+0At4g15150glycine-rich proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
45.699.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.498.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.197.7GSM195220stigma 3, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
8.097.6GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.997.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.797.6GSM195219stigma 2, biological rep 2GSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1821GO:0015696The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.Link to AmiGO
0.1251GO:0006891The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).Link to AmiGO
0.0201GO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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