Co-expression analysis

Gene ID Os04g0509500
Gene name
Homology with ArabidopsisSimilar to At1g64780: ATAMT1 (HF=3e-19)
Module size 17 genes
NF 0.25
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.90.98Os04g0509500AK107601.1-Conserved hypothetical protein3e-19At1g64780ATAMT1O.I.H.G.S.X.
0.3846.90.99Os09g05617009637.m03312--3e-2At3g18570glycine-rich protein / oleosinO.I.H.G.S.X.
0.3236.30.99Os03g0196100AK107004.1-Hypothetical protein2e+0At2g41230unknown proteinO.I.H.G.S.X.
0.3134.50.99Os01g01959009629.m00944--6e-1At2g35640hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3032.70.99Os07g0690500AK108634.1-Hypothetical protein3e+0At5g37240unknown proteinO.I.H.G.S.X.
0.3032.71.00Os01g0316400NM_183738.1--7e+0At3g07220transcriptional activator, putativeO.I.H.G.S.X.
0.3032.71.00Os06g04763009634.m02692--5e-1Atcg01120-O.I.H.G.S.X.
0.2931.10.99Os04g0524800AK064753.1-Hypothetical protein1e-3At3g55730MYB109 (myb domain protein 109)O.I.H.G.S.X.
0.2422.40.99Os07g04204009635.m02274--1e-2At1g68945unknown proteinO.I.H.G.S.X.
0.2321.20.99Os12g02706259640.m01678--5e-1At2g41430ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)O.I.H.G.S.X.
0.2117.90.99Os07g0409500AK102131.1-SKP1 component family protein1e-2At3g21840ASK7 (ARABIDOPSIS SKP1-LIKE 7)O.I.H.G.S.X.
0.1915.11.00Os01g03779009629.m02685--7e-1At5g11740AGP15 (ARABINOGALACTAN PROTEIN 15)O.I.H.G.S.X.
0.1915.10.99Os02g0271000AK072092.1-Peptidase S8 and S53, subtilisin, kexin, sedolisindomain containing protein5e-3At1g20150subtilase family proteinO.I.H.G.S.X.
0.1813.70.99Os02g04669009630.m02528--2e+0At1g32630unknown proteinO.I.H.G.S.X.
0.1611.30.99Os11g01072669639.m00059--6e-1At2g36090F-box family proteinO.I.H.G.S.X.
0.1510.30.99Os10g0191000NM_195284.1-RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein8e-1At1g50530-O.I.H.G.S.X.
0.138.20.99Os08g01541009637.m02348--4e-1At4g18580unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.298.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
14.398.6GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.298.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.798.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.498.5GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.898.4GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0141GO:0006952Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.Link to AmiGO
0.0121GO:0006915A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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