CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0508500

Gene name
Homology with Arabidopsis Similar to At3g24310: MYB305 (myb domain protein 305) (HF=5e-8)

Module size 6 genes

NF 0.52

%ile 68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.84 Os04g0508500 AK109620.1 - Snapdragon myb protein 305 homolog 5e-8 At3g24310 MYB305 (myb domain protein 305) O.I. H.G. S.X.
0.67 87.2 0.82 Os05g0515500 AK068905.1 - O-methyltransferase ZRP4 (EC 2.1.1.-) (OMT) 7e-1 At1g53625 unknown protein O.I. H.G. S.X.
0.44 58.1 0.86 Os10g0165300 NM_195010.1 - Cytochrome P450 family protein 1e-2 At2g45580 CYP76C3 O.I. H.G. S.X.
0.42 53.9 0.84 Os07g0643800 AK103858.1 - Plant disease resistance response protein familyprotein 1e-1 At1g01730 unknown protein O.I. H.G. S.X.
0.36 44.0 0.82 Os01g0307500 AK108663.1 - Cation transporter family protein 1e+0 At3g02670 proline-rich family protein O.I. H.G. S.X.
0.35 41.7 0.86 Os02g0551600 AK063102.1 - Conserved hypothetical protein 2e+0 At4g24026 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.2 98.4 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
12.9 98.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.1 98.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.1 97.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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