Co-expression analysis

Gene ID Os04g0502300
Gene name
Homology with ArabidopsisSimilar to At3g48930: EMB1080 (embryo defective 1080) (HF=6e-59)
Module size 6 genes
NF 0.28
%ile 29.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5371.30.94Os04g0502300AK120520.1-40S ribosomal protein S116e-59At3g48930EMB1080 (embryo defective 1080)O.I.H.G.S.X.
0.4458.10.96Os02g0189100AK111066.1-Conserved hypothetical protein1e-1At5g44450methyltransferaseO.I.H.G.S.X.
0.3236.30.95Os05g0297900AK071238.1-Signal peptidase 18 subunit (Fragment)3e-2At3g15710signal peptidase, putativeO.I.H.G.S.X.
0.2117.90.95Os08g0524000AK067169.1-Signal recognition particle receptor betasubunit-like protein2e-4At2g18770signal recognition particle bindingO.I.H.G.S.X.
0.2117.90.95Os03g0115200C98021-YOR3513c protein (Fragment)1e-4At3g13230RNA bindingO.I.H.G.S.X.
0.1510.30.96Os07g0673100AK103678.1-Ribosomal protein S8E family protein9e-34At5g06360ribosomal protein S8e family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.998.4GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.397.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.097.6GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.497.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.897.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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