CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0494600

Gene name
Homology with Arabidopsis Similar to At3g17410: serine/threonine protein kinase, putative (HF=5e-2)

Module size 6 genes

NF 0.57

%ile 77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.86 Os04g0494600 AK110895.1 - Protein of unknown function DUF642 family protein 5e-2 At3g17410 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.83 95.8 0.86 Os10g0459700 AK110328.1 - Xyloglucan galactosyltransferase 7e-2 At4g13990 exostosin family protein O.I. H.G. S.X.
0.50 68.0 0.91 Os04g0467000 AK073154.1 - Conserved hypothetical protein 2e+0 At4g30850 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) O.I. H.G. S.X.
0.48 63.7 0.86 Os08g0253800 AK108045.1 - Glycosyl transferase, family 2 domain containingprotein 7e-14 At4g31590 ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) O.I. H.G. S.X.
0.44 58.1 0.87 Os02g0183000 9630.m00818 - Zinc-binding protein 2e-5 At2g12646 - O.I. H.G. S.X.
0.39 48.3 0.86 Os02g0454500 AK064156.1 - Membrane bound O-acyl transferase, MBOAT familyprotein 5e-5 At5g55360 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.4 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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