CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0493600

Gene name
Homology with Arabidopsis Similar to At5g40250: zinc finger (C3HC4-type RING finger) family protein (HF=9e-1)

Module size 34 genes

NF 0.60

%ile 82.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.93 99.2 0.93 Os04g0493600 BU672803 - Chitin-binding, type 1 domain containing protein 9e-1 At5g40250 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.86 96.4 0.97 Os01g0207900 NM_188358.1 - Protein of unknown function DUF6 domain containingprotein 2e-3 At1g54410 dehydrin family protein O.I. H.G. S.X.
0.81 94.8 0.97 Os12g0490700 9640.m02969 - - 3e+0 At4g03060 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2) O.I. H.G. S.X.
0.76 92.2 0.95 Os10g0347500 9638.m01715 - - 4e+0 At2g16900 - O.I. H.G. S.X.
0.74 91.4 0.96 Os01g0588950 NM_192562.1 - - 5e+0 At1g18520 TET11 (TETRASPANIN11) O.I. H.G. S.X.
0.72 89.8 0.95 Os02g0183500 9630.m00819 - Conserved hypothetical protein 8e-1 At5g55570 unknown protein O.I. H.G. S.X.
0.70 88.4 0.96 Os07g0644900 9635.m04525 - Conserved hypothetical protein 4e-1 At3g16565 ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide binding O.I. H.G. S.X.
0.69 87.9 0.96 Os02g0473100 9630.m02594 - - 7e-2 At2g01630 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative O.I. H.G. S.X.
0.68 87.5 0.96 Os10g0171300 AK070240.1 - Cytochrome P450 family protein 3e+0 At5g07990 TT7 (TRANSPARENT TESTA 7) O.I. H.G. S.X.
0.68 87.5 0.97 Os06g0240300 9634.m01315 - - 8e-1 At2g36050 OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) O.I. H.G. S.X.
0.68 87.5 0.96 Os01g0270500 NM_188049.1 - - 5e-1 At1g06540 unknown protein O.I. H.G. S.X.
0.68 87.5 0.97 Os04g0124100 9632.m00250 - - 1e+0 At3g46890 - O.I. H.G. S.X.
0.68 87.5 0.97 Os09g0291900 9639.m04320 - - 1e+0 At1g07645 ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN) O.I. H.G. S.X.
0.67 87.2 0.97 Os08g0376100 AK108088.1 - Conserved hypothetical protein 7e+0 At5g61412 unknown protein O.I. H.G. S.X.
0.67 87.2 0.97 Os03g0437401 9631.m03155 - - 6e-2 At1g68725 AGP19 (ARABINOGALACTAN-PROTEIN 19) O.I. H.G. S.X.
0.66 83.9 0.97 Os05g0317800 9633.m02282 - - 2e-2 At3g30775 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) O.I. H.G. S.X.
0.65 83.8 0.97 Os12g0426700 9640.m02269 - - 5e+0 At5g09660 PMDH2 (peroxisomal NAD-malate dehydrogenase 2) O.I. H.G. S.X.
0.64 83.4 0.95 Os04g0289600 AK111140.1 - Allergen V5/Tpx-1 related family protein 9e-2 At3g09590 pathogenesis-related protein, putative O.I. H.G. S.X.
0.63 82.7 0.96 Os03g0368500 9631.m02476 - - 1e+1 At4g08230 glycine-rich protein O.I. H.G. S.X.
0.62 81.5 0.98 Os12g0584500 9640.m03852 - - 3e+1 At5g28730 unknown protein O.I. H.G. S.X.
0.61 81.2 0.95 Os11g0228900 9639.m01174 - - 2e+0 At1g14510 AL7 (ALFIN-LIKE 7) O.I. H.G. S.X.
0.60 79.7 0.98 Os04g0196800 9632.m01077 - - 2e+0 At5g17470 calmodulin-related protein, putative O.I. H.G. S.X.
0.57 77.0 0.95 Os03g0625600 9631.m04115 - - 4e+0 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) O.I. H.G. S.X.
0.57 77.0 0.95 Os02g0719500 9630.m04759 - - 2e-1 At5g06010 unknown protein O.I. H.G. S.X.
0.56 76.3 0.96 Os01g0156800 9629.m00565 - - 1e+0 At5g58650 PSY1 (plant peptide containing sulfated tyrosine 1) O.I. H.G. S.X.
0.55 73.7 0.96 Os06g0662750 9634.m04385 - - 4e+0 At4g03410 peroxisomal membrane protein-related O.I. H.G. S.X.
0.51 68.7 0.97 Os03g0402233 9631.m02813 - - 1e-1 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.50 68.0 0.96 Os04g0333600 9632.m02504 - - 8e-1 At3g03826 unknown protein O.I. H.G. S.X.
0.46 60.9 0.97 Os11g0162500 9633.m00870 - - 2e-2 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.45 58.8 0.96 Os12g0226600 9640.m01205 - - 7e+0 At5g39190 GER2 (GERMIN-LIKE PROTEIN 2) O.I. H.G. S.X.
0.44 58.1 0.95 Os03g0574501 9631.m03625 - - 9e-1 At3g62830 AUD1 O.I. H.G. S.X.
0.44 58.1 0.96 Os05g0531300 9634.m00196 - - 3e-1 At3g17160 unknown protein O.I. H.G. S.X.
0.39 48.3 0.95 Os08g0105500 9636.m00045 - - 4e+0 At1g10800 unknown protein O.I. H.G. S.X.
0.32 36.3 0.96 Os09g0334401 9637.m01384 - - 6e-1 At2g23320 WRKY15 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.93	99.2	0.93	Os04g0493600	BU672803	-	Chitin-binding, type 1 domain containing protein	9e-1	At5g40250	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.86	96.4	0.97	Os01g0207900	NM_188358.1	-	Protein of unknown function DUF6 domain containingprotein	2e-3	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.
0.81	94.8	0.97	Os12g0490700	9640.m02969	-	-	3e+0	At4g03060	AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)	O.I.	H.G.	S.X.
0.76	92.2	0.95	Os10g0347500	9638.m01715	-	-	4e+0	At2g16900	-	O.I.	H.G.	S.X.
0.74	91.4	0.96	Os01g0588950	NM_192562.1	-	-	5e+0	At1g18520	TET11 (TETRASPANIN11)	O.I.	H.G.	S.X.
0.72	89.8	0.95	Os02g0183500	9630.m00819	-	Conserved hypothetical protein	8e-1	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.70	88.4	0.96	Os07g0644900	9635.m04525	-	Conserved hypothetical protein	4e-1	At3g16565	ATP binding / alanine-tRNA ligase/ nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.
0.69	87.9	0.96	Os02g0473100	9630.m02594	-	-	7e-2	At2g01630	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	O.I.	H.G.	S.X.
0.68	87.5	0.96	Os10g0171300	AK070240.1	-	Cytochrome P450 family protein	3e+0	At5g07990	TT7 (TRANSPARENT TESTA 7)	O.I.	H.G.	S.X.
0.68	87.5	0.97	Os06g0240300	9634.m01315	-	-	8e-1	At2g36050	OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15)	O.I.	H.G.	S.X.
0.68	87.5	0.96	Os01g0270500	NM_188049.1	-	-	5e-1	At1g06540	unknown protein	O.I.	H.G.	S.X.
0.68	87.5	0.97	Os04g0124100	9632.m00250	-	-	1e+0	At3g46890	-	O.I.	H.G.	S.X.
0.68	87.5	0.97	Os09g0291900	9639.m04320	-	-	1e+0	At1g07645	ATDSI-1VOC (DESSICATION-INDUCED 1VOC SUPERFAMILY PROTEIN)	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os08g0376100	AK108088.1	-	Conserved hypothetical protein	7e+0	At5g61412	unknown protein	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os03g0437401	9631.m03155	-	-	6e-2	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	O.I.	H.G.	S.X.
0.66	83.9	0.97	Os05g0317800	9633.m02282	-	-	2e-2	At3g30775	ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5)	O.I.	H.G.	S.X.
0.65	83.8	0.97	Os12g0426700	9640.m02269	-	-	5e+0	At5g09660	PMDH2 (peroxisomal NAD-malate dehydrogenase 2)	O.I.	H.G.	S.X.
0.64	83.4	0.95	Os04g0289600	AK111140.1	-	Allergen V5/Tpx-1 related family protein	9e-2	At3g09590	pathogenesis-related protein, putative	O.I.	H.G.	S.X.
0.63	82.7	0.96	Os03g0368500	9631.m02476	-	-	1e+1	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.
0.62	81.5	0.98	Os12g0584500	9640.m03852	-	-	3e+1	At5g28730	unknown protein	O.I.	H.G.	S.X.
0.61	81.2	0.95	Os11g0228900	9639.m01174	-	-	2e+0	At1g14510	AL7 (ALFIN-LIKE 7)	O.I.	H.G.	S.X.
0.60	79.7	0.98	Os04g0196800	9632.m01077	-	-	2e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.
0.57	77.0	0.95	Os03g0625600	9631.m04115	-	-	4e+0	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.
0.57	77.0	0.95	Os02g0719500	9630.m04759	-	-	2e-1	At5g06010	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.96	Os01g0156800	9629.m00565	-	-	1e+0	At5g58650	PSY1 (plant peptide containing sulfated tyrosine 1)	O.I.	H.G.	S.X.
0.55	73.7	0.96	Os06g0662750	9634.m04385	-	-	4e+0	At4g03410	peroxisomal membrane protein-related	O.I.	H.G.	S.X.
0.51	68.7	0.97	Os03g0402233	9631.m02813	-	-	1e-1	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.
0.50	68.0	0.96	Os04g0333600	9632.m02504	-	-	8e-1	At3g03826	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.97	Os11g0162500	9633.m00870	-	-	2e-2	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.
0.45	58.8	0.96	Os12g0226600	9640.m01205	-	-	7e+0	At5g39190	GER2 (GERMIN-LIKE PROTEIN 2)	O.I.	H.G.	S.X.
0.44	58.1	0.95	Os03g0574501	9631.m03625	-	-	9e-1	At3g62830	AUD1	O.I.	H.G.	S.X.
0.44	58.1	0.96	Os05g0531300	9634.m00196	-	-	3e-1	At3g17160	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.95	Os08g0105500	9636.m00045	-	-	4e+0	At1g10800	unknown protein	O.I.	H.G.	S.X.
0.32	36.3	0.96	Os09g0334401	9637.m01384	-	-	6e-1	At2g23320	WRKY15	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.0 98.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.9 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.7 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
15.0	98.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.9	98.5	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
13.7	98.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2	98.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2	98.4	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7	98.4	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os04g0493600
Gene name
Homology with Arabidopsis	Similar to At5g40250: zinc finger (C3HC4-type RING finger) family protein (HF=9e-1)
Module size	34 genes
NF	0.60
%ile	82.1

Co-expression analysis

Gene ID Os04g0493600 Gene name Homology with ArabidopsisSimilar to At5g40250: zinc finger (C3HC4-type RING finger) family protein (HF=9e-1) Module size 34 genes NF 0.60 %ile 82.1

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os04g0493600

Gene name
Homology with Arabidopsis Similar to At5g40250: zinc finger (C3HC4-type RING finger) family protein (HF=9e-1)

Module size 34 genes

NF 0.60

%ile 82.1

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays