Co-expression analysis

Gene ID Os04g0493400
Gene name
Homology with ArabidopsisSimilar to At3g54420: ATEP3 (HF=4e-2)
Module size 6 genes
NF 0.67
%ile 90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.80.72Os04g0493400AB003194.1-Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)4e-2At3g54420ATEP3O.I.H.G.S.X.
0.8094.60.76Os04g0494100AB096140.1-Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)1e-1At2g43590chitinase, putativeO.I.H.G.S.X.
0.8094.60.79Os01g0382400AK121108.1-Pathogenesis-related protein PRB1-2 precursor1e-1At3g09590pathogenesis-related protein, putativeO.I.H.G.S.X.
0.7189.60.68Os01g0944700AF443600.1-Glucan endo-1,3-beta-glucosidase GII precursor (EC3.2.1.39) ((1->3)- beta-glucan endohydrolase GII)((1->3)-beta-glucanase isoenzyme GII)(Beta-1,3-endoglucanase GII)1e-2At5g20560beta-1,3-glucanase, putativeO.I.H.G.S.X.
0.6787.20.76Os03g0624300AK062353.1-Hypothetical protein1e+0At5g43211unknown proteinO.I.H.G.S.X.
0.2016.50.68Os11g0170900AK067523.1-Conserved hypothetical protein1e+0At3g63080ATGPX5 (glutathione peroxidase 5)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
149.2100.0GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
31.999.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
20.899.2GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.197.9GSM195229EndospermGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
7.897.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.197.1GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.897.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.897.0GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.796.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2112GO:0006032The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.Link to AmiGO
0.2112GO:0051707A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.Link to AmiGO
0.1542GO:0016998The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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