CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0491500

Gene name
Homology with Arabidopsis Similar to At4g21680: proton-dependent oligopeptide transport (POT) family protein (HF=2e-2)

Module size 6 genes

NF 0.46

%ile 58.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.93 Os04g0491500 AK101116.1 - TGF-beta receptor, type I/II extracellular regionfamily protein 2e-2 At4g21680 proton-dependent oligopeptide transport (POT) family protein O.I. H.G. S.X.
0.50 68.0 0.93 Os01g0551800 NM_193415.1 - Conserved hypothetical protein 2e-3 At5g24310 ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) O.I. H.G. S.X.
0.46 60.9 0.93 Os02g0715000 AK060534.1 - Cysteine proteinase GP-II (EC 3.4.22.-) 4e-5 At1g20850 XCP2 (xylem cysteine peptidase 2) O.I. H.G. S.X.
0.40 51.1 0.93 Os10g0114400 9638.m00154 - Protein kinase domain containing protein 5e-10 At2g01950 BRL2 (BRI1-LIKE 2) O.I. H.G. S.X.
0.40 51.1 0.93 Os12g0512400 AK065758.1 - Hypothetical protein 2e+0 At5g01430 Got1-like family protein O.I. H.G. S.X.
0.21 17.9 0.93 Os12g0118900 AK062692.1 - Cytochrome P450 family protein 1e-7 At5g08139 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.4 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.6 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.6 99.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g39100, orthologous to the query gene, Os04g0491500

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.53 68.6 At2g39100 818496 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOVF O.I. H.G. S.X.
0.40 50.8 At4g15240 827190 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:Golgi apparatus;PMFO O.I. H.G. S.X.
0.16 8.8 At4g25270 828630 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:chloroplast;POMFB O.I. H.G. S.X.
0.12 4.9 At5g19830 832103 aminoacyl-tRNA hydrolase F:aminoacyl-tRNA hydrolase activity;P:translation;C:mitochondrion;BOPFM O.I. H.G. S.X.
0.07 1.9 At4g00590 827968 asparaginase 2 family protein F:hydrolase activity;P:unknown;C:unknown;BOMFPA O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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