CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0490000

Gene name
Homology with Arabidopsis Similar to At5g57550: XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) (HF=2e+0)

Module size 6 genes

NF 0.40

%ile 47.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os04g0490000 AK108365.1 - Protoporphyrinogen oxidase-II 2e+0 At5g57550 XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3) O.I. H.G. S.X.
0.50 68.0 0.98 Os01g0712900 NM_191722.1 - - 4e+0 At3g13950 unknown protein O.I. H.G. S.X.
0.43 55.4 0.98 Os07g0688400 9638.m02651 - - 2e+0 At4g19270 unknown protein O.I. H.G. S.X.
0.31 34.5 0.98 Os01g0604600 AU058134 - Conserved hypothetical protein 3e+0 At3g48675 unknown protein O.I. H.G. S.X.
0.25 24.1 0.98 Os11g0549300 9639.m03124 - KI domain interacting kinase 1 3e-8 At4g21230 protein kinase family protein O.I. H.G. S.X.
0.19 15.1 0.98 Os07g0220300 NM_186594.1 - - 2e+0 At5g54660 heat shock protein-related O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
68.2 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
40.9 99.9 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.4 99.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.182 1 GO:0006779 The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
0.022 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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