Co-expression analysis

Gene ID Os04g0488600
Gene name
Homology with ArabidopsisSimilar to At5g43050: unknown protein (HF=1e-11)
Module size 11 genes
NF 0.42
%ile 51.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.93Os04g0488600AK060198.1-Protein of unknown function DUF565 family protein1e-11At5g43050unknown proteinO.I.H.G.S.X.
0.6583.80.93Os06g0623300AK102436.1-Conserved hypothetical protein6e-1At2g33600cinnamoyl-CoA reductase familyO.I.H.G.S.X.
0.5877.00.93Os03g0169800AK068278.1-HNH endonuclease domain containing protein8e-6At3g47490HNH endonuclease domain-containing proteinO.I.H.G.S.X.
0.5573.70.94Os02g0515000AK066257.1-Conserved hypothetical protein1e+0At1g50340invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.5269.60.94Os03g0823100AK103844.1-Sugar transporter-like protein8e-26At5g59250sugar transporter family proteinO.I.H.G.S.X.
0.4152.40.94Os04g0507800AK111060.1-The start codon is not identified.5e-1At4g24110unknown proteinO.I.H.G.S.X.
0.3846.90.95Os04g0306800CB626653-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein2e-2At1g47490ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C)O.I.H.G.S.X.
0.3338.80.94Os02g0768600AK059725.1--2e-68At5g09650AtPPa6 (Arabidopsis thaliana pyrophosphorylase 6)O.I.H.G.S.X.
0.3338.80.94Os01g0259600AK066193.1-Molybdenum cofactor biosynthesis protein domaincontaining protein4e-25At5g03430phosphoadenosine phosphosulfate (PAPS) reductase family proteinO.I.H.G.S.X.
0.2727.50.94Os06g0667500AK062935.1-14 kDa zinc-binding protein (Protein kinase Cinhibitor) (PKCI)1e-8At1g31160zinc-binding protein, putative / protein kinase C inhibitor, putativeO.I.H.G.S.X.
0.2321.20.94Os01g0963400AK062343.1-The start codon is not identified.9e-11At1g43560Aty2 (Arabidopsis thioredoxin y2)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.298.5GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.198.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.998.4GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.598.3GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0361GO:0006520The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage