CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0487000

Gene name
Homology with Arabidopsis Similar to At1g18170: immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein (HF=9e-2)

Module size 7 genes

NF 0.41

%ile 50.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.98 Os04g0487000 AK111312.1 - Conserved hypothetical protein 9e-2 At1g18170 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.48 63.7 0.98 Os03g0712900 AK103803.1 - TPR-like domain containing protein 1e+0 At1g54240 DNA binding O.I. H.G. S.X.
0.43 55.4 0.98 Os10g0142900 NM_194814.1 - Conserved hypothetical protein 2e-2 At2g24290 unknown protein O.I. H.G. S.X.
0.40 51.1 0.98 Os11g0124300 AK073467.1 - GRAS transcription factor family protein 3e-5 At3g54220 SCR (SCARECROW) O.I. H.G. S.X.
0.35 41.7 0.99 Os06g0669100 9634.m04451 - DNA polymerase, beta-like region domain containingprotein 1e-14 At4g00060 MEE44 (maternal effect embryo arrest 44) O.I. H.G. S.X.
0.33 38.8 0.98 Os02g0748100 AK101365.1 - RINT-1/TIP-1 family protein 3e-7 At3g47700 MAG2 (maigo2) O.I. H.G. S.X.
0.31 34.5 0.98 Os03g0806400 AK073074.1 - Nucleic acid-binding OB-fold domain containingprotein 9e-5 At1g68765 IDA (INFLORESCENCE DEFICIENT IN ABSCISSION) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.7 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.9 98.7 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3 98.1 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
10.2 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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