CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os04g0474500

Gene name
Homology with Arabidopsis Similar to At1g26560: BGLU40 (BETA GLUCOSIDASE 40) (HF=7e-2)

Module size 6 genes

NF 0.28

%ile 27.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.91 Os04g0474500 AK073031.1 - Amygdalin hydrolase isoform AH I precursor (EC3.2.1.117) 7e-2 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) O.I. H.G. S.X.
0.44 58.1 0.90 Os04g0518600 AK063087.1 - Hypothetical protein 5e+0 At5g13410 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein O.I. H.G. S.X.
0.38 46.9 0.88 Os01g0516400 CR280873 - Conserved hypothetical protein 9e+0 At5g15230 GASA4 (GAST1 PROTEIN HOMOLOG 4) O.I. H.G. S.X.
0.27 27.5 0.89 Os01g0150900 AK058767.1 - Hypothetical protein 9e-1 At1g07060 unknown protein O.I. H.G. S.X.
0.27 27.5 0.90 Os04g0554200 AK060752.1 - Major sperm protein domain containing protein 8e-3 At5g23680 sterile alpha motif (SAM) domain-containing protein O.I. H.G. S.X.
0.08 4.2 0.89 Os03g0118200 AK060919.1 - Conserved hypothetical protein 2e-16 At1g12600 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
33.7 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.9 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.5 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage